JAWS - workflow testing on Tahoma

[aclum]

Deliverable this task is associated with

_See Deliverables tab here: _

• [Add the Deliverable #]

RACI

Tag people in their roles

• Responsible: @aclum
• Accountable: @vlilanl
• Consulted: @kaijli
• Informed: workflow team

Describe the the task
Test workflows for production
high priority

• MG readqc -short reads
• MG assembly - short reads
• annotation
• binning
• read based taxonomy

medium priority

• MT readqc
• MT assembly
• MT expression

low priority

• MG readsqc - long reads
• MG assembly - long reads

Criteria for completion

• At least for the high priority list we have one successful JAWS run each

Estimate people time

• [Hours or days of people time. 1 person, 4 hours]

Completion Date (Goal)

• March 7

Target Sprint Start & End Dates

• Start: Feb 27
• End: March 7

Tag Blocker/Contingent upon issues

• [Tagg issues]

[aclum]

@vlilanl did you mean to close this? I think it got closed via a linked PR. If so please comment on which workflows were tested.

[vlilanl]

For MetaT, MT assembly and MT expression already took in inputs as Files so I just tested them directly onto Tahoma.
JAWs:
MT assembly: 100013
MT expression: 100014

[vlilanl]

Here are the automation tickets to update the versions:

• MG ReadQC: Update ReadsQC to v1.0.15 nmdc_automation#387
• MG Assembly: Update MetaAssembly Version to v1.0.9 (Tahoma) nmdc_automation#404
• Annotation: Update mg_annotation to Version 1.1.5 nmdc_automation#405
• Binning: Update metaMAGs to version 1.3.15 nmdc_automation#418
• Read Based Taxonomy: Update ReadbasedAnalysis to Version 1.0.10 nmdc_automation#411
• MT readqc: Update metaT_ReadsQC to Version 0.0.8 nmdc_automation#410