run commands from web app VM on MC login node #347
mflynn-lanl
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@edwins We are adding another workflow manager for running bioinformatics workflows called NextFlow. The way I run it on the MC cluster is to ssh as
mcflynn
and thensudo su - user
and run this commandnextflow -C /home/user/EDGEv3/workflows/Nextflow/nextflow_slurm.config run /home/user/EDGEv3/workflows/Nextflow/main.nf
. How can we execute that command from the web app VM asuser
on the login node? I can execute commands on the login node asmcflynn
using ssh. For Cromwell we can send a request to the Cromwell server running on the login node (asuser
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