try fully skipping qeML #25
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| name: R reverse dependency checks | |
| on: | |
| push: | |
| # Run manually by clicking a button in the UI | |
| workflow_dispatch: | |
| # Run on the 5th day of every month | |
| schedule: | |
| - cron: '0 0 5 * *' | |
| # automatically cancel in-progress builds if another commit is pushed | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| # parallelize compilation (extra important for Linux, where CRAN doesn't supply pre-compiled binaries) | |
| MAKEFLAGS: "-j4" | |
| # ignore R CMD CHECK NOTE checking how long it has | |
| # been since the last submission | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: 0 | |
| # CRAN ignores the "installed size is too large" NOTE, | |
| # so our CI can too. Setting to a large value here just | |
| # to catch extreme problems | |
| _R_CHECK_PKG_SIZES_THRESHOLD_: 100 | |
| # ensure that the locally-installed version of 'tidy' is used | |
| # ref: https://cran.r-project.org/doc/manuals/R-exts.html#Checking-packages | |
| R_TIDYCMD: '/usr/local/bin/tidy' | |
| jobs: | |
| test: | |
| name: r-revdepchecks (${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 60 | |
| strategy: | |
| fail-fast: false | |
| # NOTE: platforms that CRAN provides pre-compiled binaries on (like macOS and Windows) | |
| # are preferable for this, because packages installs are much faster | |
| matrix: | |
| os: | |
| - macos-14 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 5 | |
| submodules: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'release' | |
| - name: install system dependencies | |
| run: | | |
| brew install \ | |
| automake \ | |
| basictex \ | |
| checkbashisms \ | |
| libomp \ | |
| qpdf | |
| echo "/Library/TeX/texbin/" >> ${GITHUB_PATH} | |
| sudo /Library/TeX/texbin/tlmgr --verify-repo=none update --self | |
| sudo /Library/TeX/texbin/tlmgr --verify-repo=none install inconsolata helvetic rsfs | |
| - name: install tidy | |
| run: | | |
| # install tidy v5.8.0 | |
| # ref: https://groups.google.com/g/r-sig-mac/c/7u_ivEj4zhM | |
| TIDY_URL=https://github.com/htacg/tidy-html5/releases/download/5.8.0/tidy-5.8.0-macos-x86_64+arm64.pkg | |
| curl -sL ${TIDY_URL} -o tidy.pkg | |
| sudo installer \ | |
| -pkg "$(pwd)/tidy.pkg" \ | |
| -target / | |
| - name: build package | |
| run: | | |
| Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'markdown', 'Matrix', 'RhpcBLASctl'), repos = 'https://cran.r-project.org', Ncpus = parallel::detectCores(), type = 'binary')" | |
| sh ./build-cran-package.sh | |
| - name: run revdepchecks | |
| run: | | |
| Rscript -e "install.packages(c('crandep'), repos = 'https://cran.r-project.org', type = 'binary')" | |
| bash ./.ci/run-revdep-checks.sh | |
| all-r-revdepchecks-jobs-successful: | |
| if: always() | |
| runs-on: ubuntu-latest | |
| needs: [test] | |
| steps: | |
| - name: Note that all tests succeeded | |
| uses: re-actors/[email protected] | |
| with: | |
| jobs: ${{ toJSON(needs) }} |