Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[R-package] DESCRIPTION changes to address CRAN feedback #3298

Merged
merged 13 commits into from
Aug 13, 2020
3 changes: 2 additions & 1 deletion R-package/.Rbuildignore
Original file line number Diff line number Diff line change
@@ -1,7 +1,8 @@
^build_r.R$
\.gitkeep$
^docs$
^docs/.*$
^pkgdown$
^cran-comments\.md$
jameslamb marked this conversation as resolved.
Show resolved Hide resolved

# Objects created by compilation
^.*\.o
Expand Down
8 changes: 4 additions & 4 deletions R-package/DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -9,21 +9,21 @@ Authors@R: c(
person("Yachen", "Yan", role = c("ctb")),
person("James", "Lamb", email="[email protected]", role = c("ctb"))
)
Description: Tree based algorithms can be improved by introducing boosting frameworks. LightGBM is one such framework, and this package offers an R interface to work with it.
Description: Tree based algorithms can be improved by introducing boosting frameworks. 'LightGBM' is one such framework, and this package offers an R interface to work with it.
It is designed to be distributed and efficient with the following advantages:
1. Faster training speed and higher efficiency.
2. Lower memory usage.
3. Better accuracy.
4. Parallel learning supported.
5. Capable of handling large-scale data.
In recognition of these advantages, LightGBM has been widely-used in many winning solutions of machine learning competitions.
Comparison experiments on public datasets suggest that LightGBM can outperform existing boosting frameworks on both efficiency and accuracy, with significantly lower memory consumption. In addition, parallel experiments suggest that in certain circumstances, LightGBM can achieve a linear speed-up in training time by using multiple machines.
In recognition of these advantages, 'LightGBM' has been widely-used in many winning solutions of machine learning competitions.
Comparison experiments on public datasets suggest that 'LightGBM' can outperform existing boosting frameworks on both efficiency and accuracy, with significantly lower memory consumption. In addition, parallel experiments suggest that in certain circumstances, 'LightGBM' can achieve a linear speed-up in training time by using multiple machines.
Encoding: UTF-8
License: MIT + file LICENSE
URL: https://github.com/Microsoft/LightGBM
BugReports: https://github.com/Microsoft/LightGBM/issues
NeedsCompilation: yes
Biarch: false
Biarch: true
Suggests:
processx,
testthat
Expand Down
147 changes: 147 additions & 0 deletions R-package/cran-comments.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,147 @@
# CRAN Submission History

## v3.0.0-1 - Submission 3 - (August 13, 2020)
jameslamb marked this conversation as resolved.
Show resolved Hide resolved

### CRAN response

Failing pre-checks.

### `R CMD check` results

* Debian: 1 NOTE

```text
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Guolin Ke <[email protected]>’

New submission

License components with restrictions and base license permitting such:
MIT + file LICENSE
```

* Windows: 1 ERROR, 1 NOTE

```text
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Guolin Ke <[email protected]>’

New submission

License components with restrictions and base license permitting such:
MIT + file LICENSE

** running tests for arch 'i386' ... [9s] ERROR
Running 'testthat.R' [8s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(lightgbm)
Loading required package: R6
>
> test_check(
+ package = "lightgbm"
+ , stop_on_failure = TRUE
+ , stop_on_warning = FALSE
+ )
-- 1. Error: predictions do not fail for integer input (@test_Predictor.R#7) --
lgb.Dataset.construct: cannot create Dataset handle
Backtrace:
1. lightgbm::lgb.train(...)
2. data$construct()
```

### Maintainer Notes

The "checking CRAN incoming feasibility" NOTE can be safely ignored. It only shows up the first time you submit a package to CRAN.

So the only thing I see broken right now is the test error on 32-bit Windows. This is documented in https://github.com/microsoft/LightGBM/issues/3187.

## v3.0.0-1 - Submission 2 - (August 10, 2020)

### CRAN response

Failing pre-checks.

### `R CMD check` results

* Debian: 2 NOTEs

```text
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Guolin Ke <[email protected]>’

New submission

License components with restrictions and base license permitting such:
MIT + file LICENSE

Non-standard files/directories found at top level:
‘cran-comments.md’ ‘docs’
```

* Windows: 1 ERROR, 2 NOTEs

```text
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Guolin Ke <[email protected]>'

New submission

License components with restrictions and base license permitting such:
MIT + file LICENSE

* checking top-level files ... NOTE
Non-standard files/directories found at top level:
'cran-comments.md' 'docs'

** checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error: package 'lightgbm' is not installed for 'arch = i386'
Execution halted
```

### Maintainer Notes

Seems removing `Biarch` field didn't work. Noticed this in the install logs:

> Warning: this package has a non-empty 'configure.win' file, so building only the main architecture

Tried adding `Biarch: true` to `DESCRIPTION` to overcome this.

NOTE about non-standard files was the result of a mistake in `.Rbuildignore` syntax, and something strange with how `cran-comments.md` line in `.Rbuildignore` was treated. Updated `.Rbuildignore` and added an `rm cran-comments.md` to `build-cran-package.sh`.

## v3.0.0-1 - Submission 1 - (August 9, 2020)

### CRAN response

Failing pre-checks.

### `R CMD check` results

* Debian: 1 NOTE

```text
Possibly mis-spelled words in DESCRIPTION:
LightGBM (12:88, 19:41, 20:60, 20:264)
```

* Windows: 1 ERROR, 1 NOTE

```text
Possibly mis-spelled words in DESCRIPTION:
LightGBM (12:88, 19:41, 20:60, 20:264)

** checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error: package 'lightgbm' is not installed for 'arch = i386'
Execution halted
```

### Maintainer Notes

Thought the issue on Windows was caused by `Biarch: false` in `DESCRIPTION`. Removed `Biarch` field.

Thought the "misspellings" issue could be resolved by adding single quotes around LightGBM, like `'LightGBM'`.
1 change: 1 addition & 0 deletions build-cran-package.sh
Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,7 @@ cd ${TEMP_R_DIR}
rm -r src/cmake/
rm -r inst/
rm -r pkgdown/
rm cran-comments.md
rm AUTOCONF_UBUNTU_VERSION
rm recreate-configure.sh

Expand Down