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Bump scikit-image from 0.22.0 to 0.23.1 in /requirements #1989

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merged 1 commit into from
Apr 13, 2024

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@dependabot dependabot bot commented on behalf of github Apr 10, 2024

Bumps scikit-image from 0.22.0 to 0.23.1.

Release notes

Sourced from scikit-image's releases.

v0.23.1

scikit-image 0.23.1

We're happy to announce the release of scikit-image 0.23.1!

Highlights

  • Ensure skimage.morphology.closing and skimage.morphology.opening are extensive and anti-extensive, respectively, if the footprint is not mirror symmetric (#6695).
  • Add parameter mode to binary_erosion, binary_dilation, binary_opening and binary_closing in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Add parameters mode and cval to erosion, dilation, opening, closing, white_tophat, and black_tophat in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Speedup skimage.util.map_array by parallelization with Cython's prange (#7266).

New Features

  • Add new intensity_std property to skimage.measure.regionprops which computes the standard deviation of the intensity in a region (#6712).
  • Add parameter mode to binary_erosion, binary_dilation, binary_opening and binary_closing in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Add functions mirror_footprint and pad_footprint to skimage.morphology (#6695).
  • Add parameters mode and cval to erosion, dilation, opening, closing, white_tophat, and black_tophat in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Add new parameter spacing to segmentation.expand_labels to support anisotropic images (#7080).

API Changes

  • Drop support for Python 3.9 (#7217).
  • Parameters shift_x and shift_y in skimage.morphology.erosion and skimage.morphology.dilation are deprecated. Use pad_footprint or modify the footprint manually instead (#6695).
  • Remove unexpected value scaling in skimage.morphology.skeletonize_3d for non-binary input images. skeletonize_3d now always returns a binary array like similar functions (#7095).
  • Deprecate function skimage.feature.plot_matches in favor of skimage.feature.plot_matched_features (#7255).
  • Deprecate skimage.morphology.skeletonize_3d in favor of just skimage.morphology.skeletonize (#7094).
  • Deprecate parameter output in skimage.filters.gaussian; use out instead (#7225).
  • Change the default value of the parameters shift_x, shift_y and shift_z from False to 0 in the skimage.filters.rank functions. This has not impact on the results. Warn in case boolean shifts are provided from now on (#7320).

Performance

  • Add lazy loading to skimage.metrics module (#7211).
  • Speedup skimage.util.map_array by parallelization with Cython's prange (#7266).

Bug Fixes

  • Add exception to avoid surprising result when image is too small for the given parameters in skimage.feature.hog (#7153).
  • Ensure skimage.morphology.closing and skimage.morphology.opening are extensive and anti-extensive, respectively, if the footprint is not mirror symmetric (#6695).
  • Avoid a TypeError in skimage.registration.phase_cross_correlation when the real-time shift cannot be determined (disambiguate=True). Display a warning instead (#7259).
  • Fix logic in skimage.graph.pixel_graph which raised a TypeError when the parameter edge_function was provided without a mask (#7310).
  • Ensure cache stays empty when cache=False is passed to skimage.measure.regionprops (#7333).

Documentation

  • Update instructions for updating dev environment (#7160).
  • Make titles in RAG gallery examples more explicit (#7202).
  • Add docstring to skimage.graph module (#7192).
  • Use consistent notation for array dimensions in the docstrings (#3031).
  • Specify default markers in watershed docstring (#7154).

... (truncated)

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Bumps [scikit-image](https://github.com/scikit-image/scikit-image) from 0.22.0 to 0.23.1.
- [Release notes](https://github.com/scikit-image/scikit-image/releases)
- [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt)
- [Commits](scikit-image/scikit-image@v0.22.0...v0.23.1)

---
updated-dependencies:
- dependency-name: scikit-image
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Packaging and dependencies python Pull requests that update Python code labels Apr 10, 2024
@adamjstewart adamjstewart enabled auto-merge (squash) April 10, 2024 20:22
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Codecov now has a 100% failure rate: codecov/feedback#301. Going to force merge.

@adamjstewart adamjstewart merged commit 2dfdc37 into main Apr 13, 2024
19 checks passed
@adamjstewart adamjstewart deleted the dependabot/pip/requirements/scikit-image-0.23.1 branch April 13, 2024 17:16
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