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Formatted some more Python code with black
We currently don't format all the python code automatically but we think it may be a good idea to do it more and more. Eventually we'll get to a point where all the code has the same coding standards (although some of the formatting decisions may make the code slightly less readable, e.g. see `test_tool.py` file in this commit) NOTE: Keeping these formatting changes in separate commits for the moment to make it explicit in Git history. Would help when investigating bugs with with Git bisect/blame and reduce the time spent getting to the real commit which may have caused it and the reasons why these changes were made. Keeping these formatting changes with other changes may confusing for the person investigating.
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