chore(deps): update all non-major dependencies

.config/dotnet-tools.json

@@ -3,7 +3,7 @@
   "isRoot": true,
   "tools": {
     "csharpier": {
-      "version": "0.25.0",
+      "version": "0.27.2",
       "commands": ["dotnet-csharpier"]
     }
   }

charts/recruit/Chart.lock

@@ -7,12 +7,12 @@ dependencies:
   version: 5.2.3
 - name: ohdsi
   repository: oci://ghcr.io/chgl/charts
-  version: 0.21.9
+  version: 0.22.3
 - name: postgresql
   repository: oci://registry-1.docker.io/bitnamicharts
   version: 13.2.27
 - name: fhir-pseudonymizer
   repository: oci://ghcr.io/miracum/charts
-  version: 0.5.7
-digest: sha256:4f368946f11d32880d68fef79f1f6def7d407897da7e11d34e237b12b5fe0200
-generated: "2024-01-13T16:34:38.919972344+01:00"
+  version: 0.6.3
+digest: sha256:8d6e1a0eae2d0b1d846cfe5faa2c4bda040630ec7cf8de0c0b2596e5053deee4
+generated: "2024-02-08T13:44:44.135607576Z"

charts/recruit/Chart.yaml

@@ -30,14 +30,14 @@ dependencies:
   - condition: ohdsi.enabled
     name: ohdsi
     repository: oci://ghcr.io/chgl/charts
-    version: 0.21.9
+    version: 0.22.3
   - name: postgresql
     version: 13.2.27
     repository: oci://registry-1.docker.io/bitnamicharts
     condition: postgresql.enabled
   - condition: fhir-pseudonymizer.enabled
     name: fhir-pseudonymizer
-    version: 0.5.7
+    version: 0.6.3
     repository: oci://ghcr.io/miracum/charts
 # x-release-please-start-version
 version: 10.1.8

charts/recruit/values.yaml

@@ -677,7 +677,7 @@ curl: # +doc-gen:ignore
   image:
     registry: docker.io
     repository: curlimages/curl
-    tag: 8.4.0@sha256:4a3396ae573c44932d06ba33f8696db4429c419da87cbdc82965ee96a37dd0af
+    tag: 8.6.0@sha256:c3b8bee303c6c6beed656cfc921218c529d65aa61114eb9e27c62047a1271b9b
 
 broadseaAtlasdb:
   # -- whether to deploy the OHDSI Broadsea Atlasdb (<https://github.com/OHDSI/Broadsea-Atlasdb>)

docker-compose/docker-compose.probe.yaml

@@ -1,6 +1,6 @@
 services:
   health-probes:
-    image: docker.io/curlimages/curl:8.4.0@sha256:4a3396ae573c44932d06ba33f8696db4429c419da87cbdc82965ee96a37dd0af
+    image: docker.io/curlimages/curl:8.6.0@sha256:c3b8bee303c6c6beed656cfc921218c529d65aa61114eb9e27c62047a1271b9b
     ipc: private
     security_opt:
       - "no-new-privileges:true"

docker-compose/docker-compose.staging.yaml

@@ -1,6 +1,6 @@
 services:
   traefik:
-    image: docker.io/library/traefik:2.10.5@sha256:948978f7ec62f137a79f8af7044a1785bd7868706ef2c8cba9c88db688d08661
+    image: docker.io/library/traefik:2.10.7@sha256:6341b98aec5ec8969b99e9730f4c5b22cca3103d42b6bbe4b7a3c910758fe565
     restart: unless-stopped
     ipc: none
     security_opt:
@@ -36,7 +36,7 @@ services:
           memory: 2048m
 
   ohdsi-webapi:
-    image: docker.io/ohdsi/webapi:2.13.0@sha256:04313754fc79a6e362a8116ef462360e3891581a045924f4ec5ed404fbb9b837
+    image: docker.io/ohdsi/webapi:2.14.0@sha256:582b59b186fde5936081c1df6e41cba53e45e112d5b4875ddfda1e4dee4b2981
     restart: unless-stopped
     ipc: none
     security_opt:
@@ -79,7 +79,7 @@ services:
       - "traefik.http.routers.ohdsi-webapi.entrypoints=web"
 
   ohdsi-atlas:
-    image: docker.io/ohdsi/atlas:2.13.0@sha256:e91501a45c96debc83715631a31b3417a37d0ac3020701f9823413ec86cb5b0e
+    image: docker.io/ohdsi/atlas:2.14.1@sha256:bd095ed794a6619f877d72c13ecfc22c8bb8a863937392857866e4bd6015157f
     restart: unless-stopped
     ipc: none
     security_opt:
@@ -102,7 +102,7 @@ services:
       - "traefik.http.routers.ohdsi-atlas.entrypoints=web"
 
   fhir:
-    image: docker.io/hapiproject/hapi:v6.8.3@sha256:6195f1116ebabfb0a608addde043b3e524c456c4d4f35b3d25025afd7dcd2e27
+    image: docker.io/hapiproject/hapi:v6.10.1@sha256:4eac1b3481180b028616d1fab7e657e368538063d75f7ed3be2032e34c657dd4
     restart: unless-stopped
     cap_drop:
       - ALL

src/Dockerfile

@@ -1,4 +1,4 @@
-FROM docker.io/library/gradle:8.4.0-jdk17@sha256:70da12adf27e83bcc125af9d2bc6f9432590e89c96609625aa688135b27e75fb AS build
+FROM docker.io/library/gradle:8.6.0-jdk17@sha256:05a2d55e715fa98b1bb75a87c9589d349721137ae0825c4ee726907523a62af7 AS build
 WORKDIR /home/gradle/src
 ENV GRADLE_USER_HOME="/gradle"
 

src/buildSrc/build.gradle

@@ -15,10 +15,10 @@ repositories {
 }
 
 dependencies {
-    implementation 'org.springframework.boot:spring-boot-gradle-plugin:3.1.5'
-    implementation 'io.spring.gradle:dependency-management-plugin:1.1.3'
+    implementation 'org.springframework.boot:spring-boot-gradle-plugin:3.2.2'
+    implementation 'io.spring.gradle:dependency-management-plugin:1.1.4'
     implementation 'com.google.cloud.tools:jib-gradle-plugin:3.4.0'
-    implementation 'com.diffplug.spotless:spotless-plugin-gradle:6.22.0'
+    implementation 'com.diffplug.spotless:spotless-plugin-gradle:6.25.0'
     implementation 'io.freefair.gradle:lombok-plugin:8.4'
     implementation 'de.undercouch:gradle-download-task:5.5.0'
 }

src/buildSrc/src/main/groovy/org.miracum.recruit.java-application-conventions.gradle

@@ -37,19 +37,19 @@ dependencies {
     implementation 'org.springframework.boot:spring-boot-starter-jdbc'
     implementation 'org.springframework.boot:spring-boot-starter-data-jdbc'
 
-    implementation 'ca.uhn.hapi.fhir:hapi-fhir-base:6.8.5'
-    implementation 'ca.uhn.hapi.fhir:hapi-fhir-client:6.8.5'
-    implementation 'ca.uhn.hapi.fhir:hapi-fhir-structures-r4:6.8.4'
-    implementation 'ca.uhn.hapi.fhir:hapi-fhir-client-okhttp:6.8.5'
+    implementation 'ca.uhn.hapi.fhir:hapi-fhir-base:6.10.4'
+    implementation 'ca.uhn.hapi.fhir:hapi-fhir-client:6.10.4'
+    implementation 'ca.uhn.hapi.fhir:hapi-fhir-structures-r4:6.10.4'
+    implementation 'ca.uhn.hapi.fhir:hapi-fhir-client-okhttp:6.10.4'
 
     implementation 'com.squareup.okhttp3:okhttp:4.12.0'
 
     implementation 'net.logstash.logback:logstash-logback-encoder:7.4'
 
-    implementation 'org.postgresql:postgresql:42.6.0'
+    implementation 'org.postgresql:postgresql:42.7.1'
 
-    implementation 'io.micrometer:micrometer-registry-prometheus:1.11.5'
-    implementation 'io.micrometer:micrometer-core:1.11.5'
+    implementation 'io.micrometer:micrometer-registry-prometheus:1.12.2'
+    implementation 'io.micrometer:micrometer-core:1.12.2'
 
     constraints {
         implementation('org.apache.commons:commons-text:1.11.0')
@@ -105,7 +105,7 @@ spotless {
 }
 
 checkstyle {
-    toolVersion '10.12.4'
+    toolVersion '10.13.0'
     configFile = file('../config/checkstyle/checkstyle.xml')
 }
 

src/gradle/wrapper/gradle-wrapper.properties

@@ -1,6 +1,6 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.4-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.6-bin.zip
 networkTimeout=10000
 validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME

src/gradlew

@@ -145,15 +145,15 @@ if ! "$cygwin" && ! "$darwin" && ! "$nonstop" ; then
     case $MAX_FD in #(
       max*)
         # In POSIX sh, ulimit -H is undefined. That's why the result is checked to see if it worked.
-        # shellcheck disable=SC3045
+        # shellcheck disable=SC2039,SC3045
         MAX_FD=$( ulimit -H -n ) ||
             warn "Could not query maximum file descriptor limit"
     esac
     case $MAX_FD in  #(
       '' | soft) :;; #(
       *)
         # In POSIX sh, ulimit -n is undefined. That's why the result is checked to see if it worked.
-        # shellcheck disable=SC3045
+        # shellcheck disable=SC2039,SC3045
         ulimit -n "$MAX_FD" ||
             warn "Could not set maximum file descriptor limit to $MAX_FD"
     esac
@@ -202,11 +202,11 @@ fi
 # Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
 DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
 
-# Collect all arguments for the java command;
-#   * $DEFAULT_JVM_OPTS, $JAVA_OPTS, and $GRADLE_OPTS can contain fragments of
-#     shell script including quotes and variable substitutions, so put them in
-#     double quotes to make sure that they get re-expanded; and
-#   * put everything else in single quotes, so that it's not re-expanded.
+# Collect all arguments for the java command:
+#   * DEFAULT_JVM_OPTS, JAVA_OPTS, JAVA_OPTS, and optsEnvironmentVar are not allowed to contain shell fragments,
+#     and any embedded shellness will be escaped.
+#   * For example: A user cannot expect ${Hostname} to be expanded, as it is an environment variable and will be
+#     treated as '${Hostname}' itself on the command line.
 
 set -- \
         "-Dorg.gradle.appname=$APP_BASE_NAME" \

src/gradlew.bat

@@ -43,11 +43,11 @@ set JAVA_EXE=java.exe
 %JAVA_EXE% -version >NUL 2>&1
 if %ERRORLEVEL% equ 0 goto execute
 
-echo.
-echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
-echo.
-echo Please set the JAVA_HOME variable in your environment to match the
-echo location of your Java installation.
+echo. 1>&2
+echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. 1>&2
+echo. 1>&2
+echo Please set the JAVA_HOME variable in your environment to match the 1>&2
+echo location of your Java installation. 1>&2
 
 goto fail
 
@@ -57,11 +57,11 @@ set JAVA_EXE=%JAVA_HOME%/bin/java.exe
 
 if exist "%JAVA_EXE%" goto execute
 
-echo.
-echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME%
-echo.
-echo Please set the JAVA_HOME variable in your environment to match the
-echo location of your Java installation.
+echo. 1>&2
+echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% 1>&2
+echo. 1>&2
+echo Please set the JAVA_HOME variable in your environment to match the 1>&2
+echo location of your Java installation. 1>&2
 
 goto fail
 

src/hack/docker-compose.yaml

@@ -1,6 +1,6 @@
 services:
   traefik:
-    image: docker.io/library/traefik:2.10.5@sha256:948978f7ec62f137a79f8af7044a1785bd7868706ef2c8cba9c88db688d08661
+    image: docker.io/library/traefik:2.10.7@sha256:6341b98aec5ec8969b99e9730f4c5b22cca3103d42b6bbe4b7a3c910758fe565
     restart: unless-stopped
     ipc: none
     security_opt:
@@ -23,7 +23,7 @@ services:
           memory: 128m
 
   fhir:
-    image: docker.io/hapiproject/hapi:v6.8.3@sha256:6195f1116ebabfb0a608addde043b3e524c456c4d4f35b3d25025afd7dcd2e27
+    image: docker.io/hapiproject/hapi:v6.10.1@sha256:4eac1b3481180b028616d1fab7e657e368538063d75f7ed3be2032e34c657dd4
     restart: unless-stopped
     cap_drop:
       - ALL
@@ -84,7 +84,7 @@ services:
       - "127.0.0.1:25432:5432"
 
   ohdsi-webapi:
-    image: docker.io/ohdsi/webapi:2.13.0@sha256:04313754fc79a6e362a8116ef462360e3891581a045924f4ec5ed404fbb9b837
+    image: docker.io/ohdsi/webapi:2.14.0@sha256:582b59b186fde5936081c1df6e41cba53e45e112d5b4875ddfda1e4dee4b2981
     restart: unless-stopped
     ipc: none
     security_opt:
@@ -143,7 +143,7 @@ services:
       - "traefik.http.routers.ohdsi-webapi.entrypoints=web"
 
   ohdsi-atlas:
-    image: docker.io/ohdsi/atlas:2.13.0@sha256:e91501a45c96debc83715631a31b3417a37d0ac3020701f9823413ec86cb5b0e
+    image: docker.io/ohdsi/atlas:2.14.1@sha256:bd095ed794a6619f877d72c13ecfc22c8bb8a863937392857866e4bd6015157f
     restart: unless-stopped
     ipc: none
     security_opt:
@@ -270,7 +270,7 @@ services:
       OTEL_EXPORTER_JAEGER_ENDPOINT: "http://jaeger:14250"
 
   jaeger:
-    image: docker.io/jaegertracing/all-in-one:1.50.0@sha256:d589499a01e1e2f9d302db8e210af09688076fd8a93278fa024824a755c1a0f1
+    image: docker.io/jaegertracing/all-in-one:1.54.0@sha256:f4044964505c81bf12131c2dfd1f4ddf1d1421bbbd9d79f691221cac077599a8
     ports:
       - "127.0.0.1:16686:16686"
       - "127.0.0.1:6831:6831/udp"

src/list/Dockerfile

@@ -1,4 +1,4 @@
-FROM docker.io/library/node:20.9.0@sha256:146bbe4eaee99ae885be2a0a767f63a4b96032141d70d80e590f10e0d7ebabcb AS base
+FROM docker.io/library/node:20.11.0@sha256:fd0115473b293460df5b217ea73ff216928f2b0bb7650c5e7aa56aae4c028426 AS base
 WORKDIR /app
 
 COPY package.json ./

src/list/frontend/deploy/docker-compose.dev.yml

@@ -2,7 +2,7 @@ version: "3.9"
 
 services:
   fhir:
-    image: docker.io/hapiproject/hapi:v6.8.3@sha256:6195f1116ebabfb0a608addde043b3e524c456c4d4f35b3d25025afd7dcd2e27
+    image: docker.io/hapiproject/hapi:v6.10.1@sha256:4eac1b3481180b028616d1fab7e657e368538063d75f7ed3be2032e34c657dd4
     environment:
       HAPI_FHIR_VALIDATION_REQUESTS_ENABLED: "true"
       HAPI_FHIR_SUBSCRIPTION_RESTHOOK_ENABLED: "true"
@@ -14,7 +14,7 @@ services:
       - 8082:8080
 
   loader:
-    image: docker.io/curlimages/curl:8.4.0@sha256:4a3396ae573c44932d06ba33f8696db4429c419da87cbdc82965ee96a37dd0af
+    image: docker.io/curlimages/curl:8.6.0@sha256:c3b8bee303c6c6beed656cfc921218c529d65aa61114eb9e27c62047a1271b9b
     command: >
       sh -c "curl -X POST -H 'Content-Type:application/fhir+json' --retry-connrefuse --connect-timeout 30 --max-time 60 --retry 5 --retry-delay 15 --data '@/data/sample-record-1.json' http://fhir:8080/fhir &&
              curl -X POST -H 'Content-Type:application/fhir+json' --retry-connrefuse --connect-timeout 30 --max-time 60 --retry 5 --retry-delay 15 --data '@/data/sample-record-2.json' http://fhir:8080/fhir &&
@@ -26,7 +26,7 @@ services:
       - fhir
 
   jaeger:
-    image: docker.io/jaegertracing/all-in-one:1.50@sha256:d589499a01e1e2f9d302db8e210af09688076fd8a93278fa024824a755c1a0f1
+    image: docker.io/jaegertracing/all-in-one:1.54@sha256:f4044964505c81bf12131c2dfd1f4ddf1d1421bbbd9d79f691221cac077599a8
     environment:
       COLLECTOR_OTLP_ENABLED: "true"
     ports:
@@ -51,7 +51,7 @@ services:
       - 8083:8080
 
   fhir-pseudonymizer:
-    image: ghcr.io/miracum/fhir-pseudonymizer:v2.21.1@sha256:5aa89bff83b57d7206ec7c70363623ddfcc22936044325e34cc3075499e436ba
+    image: ghcr.io/miracum/fhir-pseudonymizer:v2.21.5@sha256:3716c2f31a4d975dc5a301b5799f92a8d5ef126159110e4e57c3cac497bd45d2
     environment:
       APIKEY: "fhir-pseudonymizer-api-key"
       TRACING__ENABLED: "true"

src/list/frontend/package.json

@@ -14,18 +14,18 @@
     "@fortawesome/fontawesome-svg-core": "1.2.36",
     "@fortawesome/free-solid-svg-icons": "5.15.4",
     "@fortawesome/vue-fontawesome": "2.0.10",
-    "axios": "1.6.0",
-    "buefy": "0.9.25",
-    "core-js": "3.33.2",
-    "csv-stringify": "6.4.4",
-    "fhirclient": "2.5.2",
-    "fhirpath": "3.8.1",
-    "vue": "2.7.15",
+    "axios": "1.6.7",
+    "buefy": "0.9.27",
+    "core-js": "3.35.1",
+    "csv-stringify": "6.4.5",
+    "fhirclient": "2.5.3",
+    "fhirpath": "3.10.1",
+    "vue": "2.7.16",
     "vue-router": "3.6.5",
     "vuejs-logger": "1.5.5"
   },
   "devDependencies": {
-    "@babel/eslint-parser": "7.22.15",
+    "@babel/eslint-parser": "7.23.10",
     "@vue/cli-plugin-babel": "5.0.8",
     "@vue/cli-plugin-eslint": "5.0.8",
     "@vue/cli-plugin-router": "5.0.8",
@@ -35,14 +35,14 @@
     "@vue/test-utils": "1.3.6",
     "@vue/vue2-jest": "29.2.2",
     "cypress-keycloak": "2.0.1",
-    "eslint": "8.52.0",
+    "eslint": "8.56.0",
     "eslint-config-prettier": "9.1.0",
-    "eslint-plugin-vue": "9.18.1",
+    "eslint-plugin-vue": "9.21.1",
     "jest": "29.7.0",
-    "pino": "8.16.1",
-    "sass": "1.69.5",
-    "sass-loader": "14.0.0",
-    "vue-template-compiler": "2.7.15"
+    "pino": "8.18.0",
+    "sass": "1.70.0",
+    "sass-loader": "14.1.0",
+    "vue-template-compiler": "2.7.16"
   },
   "optionalDependencies": {
     "@vue/cli-plugin-e2e-cypress": "5.0.8",

src/list/frontend/tests/e2e/cypress.Dockerfile

@@ -1,4 +1,4 @@
-FROM docker.io/cypress/included:13.6.2@sha256:0f48995a7d06113a405534448a6bf6529e324d69a4b3e0e9b2fa02a8308ec2da
+FROM docker.io/cypress/included:13.6.4@sha256:2bac8865f25128665d2184b1592623398b4428ea0e1c82e586c82fb65a7aa46b
 WORKDIR /root
 ENV CI=1
 

src/list/frontend/tests/e2e/docker-compose.yaml

@@ -34,15 +34,15 @@ services:
       - ${PWD}/frontend:/root/e2e
 
   fhir:
-    image: docker.io/hapiproject/hapi:v6.8.3@sha256:6195f1116ebabfb0a608addde043b3e524c456c4d4f35b3d25025afd7dcd2e27
+    image: docker.io/hapiproject/hapi:v6.10.1@sha256:4eac1b3481180b028616d1fab7e657e368538063d75f7ed3be2032e34c657dd4
     environment:
       HAPI_FHIR_VALIDATION_REQUESTS_ENABLED: "true"
       HAPI_FHIR_SUBSCRIPTION_RESTHOOK_ENABLED: "true"
       HAPI_FHIR_FHIR_VERSION: "R4"
       HAPI_FHIR_CORS_ALLOWED_ORIGIN: "http://list:8080"
 
   loader:
-    image: docker.io/curlimages/curl:8.4.0@sha256:4a3396ae573c44932d06ba33f8696db4429c419da87cbdc82965ee96a37dd0af
+    image: docker.io/curlimages/curl:8.6.0@sha256:c3b8bee303c6c6beed656cfc921218c529d65aa61114eb9e27c62047a1271b9b
     command: >
       sh -c "curl -X POST -H 'Content-Type: application/fhir+json' --retry-connrefuse --connect-timeout 30 --max-time 60 --retry 10 --retry-delay 15 --data '@/data/sample-record-1.json' http://fhir:8080/fhir &&
              curl -X POST -H 'Content-Type: application/fhir+json' --retry-connrefuse --connect-timeout 30 --max-time 60 --retry 10 --retry-delay 15 --data '@/data/sample-record-2.json' http://fhir:8080/fhir &&
@@ -70,4 +70,4 @@ services:
       - ${PWD}/frontend/deploy/data/aio-export.json:/tmp/realm.json:ro
 
   jaeger:
-    image: docker.io/jaegertracing/all-in-one:1.50@sha256:d589499a01e1e2f9d302db8e210af09688076fd8a93278fa024824a755c1a0f1
+    image: docker.io/jaegertracing/all-in-one:1.54@sha256:f4044964505c81bf12131c2dfd1f4ddf1d1421bbbd9d79f691221cac077599a8