netcdf ubuntu ci 8 #8
Workflow file for this run
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| name: netcdf-4.7.4_pnetcdf-12.1_ncint_openmpi_4.0.4 | |
| on: | |
| push: | |
| branches: [ master, netcdf-ci-test2 ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| CPPFLAGS: "-I/home/runner/openmpi/include -I/home/runner/hdf5/include -I/home/runner/netcdf-c/include -I/home/runner/netcdf-fortran/include -I/home/runner/pnetcdf/include" | |
| LDFLAGS: "-L/home/runner/openmpi/lib -L/home/runner/hdf5/lib -L/home/runner/netcdf-c/lib -L/home/runner/netcdf-fortran/lib -L/home/runner/pnetcdf/lib" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Installs | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install doxygen graphviz wget gfortran libjpeg-dev libz-dev libcurl4-openssl-dev | |
| - name: cache-openmpi | |
| id: cache-openmpi | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/openmpi | |
| key: openmpi-${{ runner.os }}-4.0.4 | |
| - name: build-openmpi | |
| if: steps.cache-openmpi.outputs.cache-hit != 'true' | |
| run: | | |
| #wget https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.4.tar.gz &> /dev/null | |
| #tar -xzf openmpi-4.0.4.tar.gz | |
| #pushd openmpi-4.0.4 | |
| wget https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.5.tar.gz &> /dev/null | |
| tar -xzf openmpi-4.1.5.tar.gz | |
| pushd openmpi-4.1.5 | |
| ./configure --prefix=/home/runner/openmpi | |
| make | |
| sudo make install | |
| popd | |
| - name: cache-hdf5 | |
| id: cache-hdf5 | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/hdf5 | |
| key: hdf5-${{ runner.os }}-1.10.6-openmpi-4.0.4 | |
| - name: build-hdf5 | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| export PATH="/home/runner/openmpi/bin:$PATH" | |
| export CC=/home/runner/openmpi/bin/mpicc | |
| #wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.6/src/hdf5-1.10.6.tar.gz &> /dev/null | |
| #tar -xzf hdf5-1.10.6.tar.gz | |
| #pushd hdf5-1.10.6 | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.14/hdf5-1.14.1/src/hdf5-1.14.1-2.tar.gz &> /dev/null | |
| tar -xzf hdf5-1.14.1-2.tar.gz | |
| pushd hdf5-1.14.1-2 | |
| ./configure --prefix=/home/runner/hdf5 --enable-parallel --disable-tools --disable-fortran --disable-cxx --enable-parallel-tests | |
| make | |
| sudo make install | |
| popd | |
| - name: cache-netcdf-c | |
| id: cache-netcdf-c | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/netcdf-c | |
| key: netcdf-c-${{ runner.os }}-4.7.4-openmpi-4.0.4 | |
| - name: build-netcdf-c | |
| if: steps.cache-netcdf-c.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| export PATH="/home/runner/openmpi/bin:$PATH" | |
| export CC=/home/runner/openmpi/bin/mpicc | |
| #wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-c-4.7.4.tar.gz &> /dev/null | |
| #file netcdf-c-4.7.4.tar.gz | |
| ##tar -xzf netcdf-c-4.7.4.tar.gz | |
| #tar -xf netcdf-c-4.7.4.tar.gz | |
| #pushd netcdf-c-4.7.4 | |
| wget https://downloads.unidata.ucar.edu/netcdf-c/4.9.2/netcdf-c-4.9.2.tar.gz &> /dev/null | |
| tar -xzf netcdf-c-4.9.2.tar.gz | |
| pushd netcdf-c-4.9.2 | |
| ./configure --prefix=/home/runner/netcdf-c --disable-dap --disable-utilities | |
| make -j | |
| sudo make install | |
| popd | |
| - name: cache-netcdf-fortran | |
| id: cache-netcdf-fortran | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/netcdf-fortran | |
| key: netcdf-fortran-${{ runner.os }}-4.5.3-openmpi-4.0.4 | |
| - name: build-netcdf-fortran | |
| if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| export PATH="/home/runner/openmpi/bin:$PATH" | |
| export CC=/home/runner/openmpi/bin/mpicc | |
| #wget https://github.com/Unidata/netcdf-fortran/archive/v4.5.3.tar.gz &> /dev/null | |
| #file v4.5.3.tar.gz | |
| #tar -xzf v4.5.3.tar.gz | |
| #pushd netcdf-fortran-4.5.3 | |
| wget https://downloads.unidata.ucar.edu/netcdf-fortran/4.6.1/netcdf-fortran-4.6.1.tar.gz &> /dev/null | |
| tar -xzf netcdf-fortran-4.6.1.tar.gz | |
| pushd netcdf-fortran-4.6.1 | |
| ./configure --prefix=/home/runner/netcdf-fortran | |
| make -j | |
| sudo make install | |
| popd | |
| - name: cache-pnetcdf | |
| id: cache-pnetcdf | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/pnetcdf | |
| key: pnetcdf-${{ runner.os }}-1.12.1-openmpi-4.0.4 | |
| - name: build-pnetcdf | |
| if: steps.cache-pnetcdf.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| export PATH="/home/runner/openmpi/bin:$PATH" | |
| export CC=/home/runner/openmpi/bin/mpicc | |
| #wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.1.tar.gz &> /dev/null | |
| #tar -xzf pnetcdf-1.12.1.tar.gz | |
| #pushd pnetcdf-1.12.1 | |
| wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz &> /dev/null | |
| tar -xzf pnetcdf-1.12.3.tar.gz | |
| pushd pnetcdf-1.12.3 | |
| ./configure --prefix=/home/runner/pnetcdf --enable-shared --disable-cxx | |
| make | |
| sudo make install | |
| popd | |
| - name: autotools build | |
| run: | | |
| set -x | |
| echo 'export PATH=/home/runner/openmpi/bin:$PATH' > .bashrc | |
| source .bashrc | |
| export PATH="/home/runner/openmpi/bin:$PATH" | |
| export CC=/home/runner/openmpi/bin/mpicc | |
| autoreconf -i | |
| ./configure --with-mpiexec='mpiexec --oversubscribe' | |
| cat config.h | |
| make check | |
| - name: cmake build | |
| run: | | |
| set -x | |
| echo 'export PATH=/home/runner/openmpi/bin:$PATH' > .bashrc | |
| source .bashrc | |
| export CC=mpicc | |
| mkdir build | |
| cd build | |
| export LD_LIBRARY_PATH="/home/runner/netcdf-c/lib:/home/runner/pnetcdf/lib:/home/runner/hdf5/lib:/home/runner/openmpi/lib:$LD_LIBRARY_PATH" | |
| cmake -Wno-dev -DWITH_MPIEXEC='/home/runner/openmpi/bin/mpiexec;--oversubscribe' -DNetCDF_C_LIBRARY=/home/runner/netcdf-c/lib/libnetcdf.so -DNetCDF_C_INCLUDE_DIR=/home/runner/netcdf-c/include -DPnetCDF_PATH='/home/runner/pnetcdf' -DPIO_ENABLE_FORTRAN=Off -DPIO_HDF5_LOGGING=On -DPIO_USE_MALLOC=On -DPIO_ENABLE_LOGGING=On -DPIO_ENABLE_TIMING=Off .. || (cat CMakeFiles/CMakeOutput.log && cat CMakeFiles/CMakeError.log) | |
| cat config.h | |
| make VERBOSE=1 | |
| make tests VERBOSE=1 | |
| ctest -VV |