Workflow file for this run
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| name: MODFLOW 6 continuous integration | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| - ci-diagnose* | |
| - netcdf-ci | |
| paths-ignore: | |
| - '**.md' | |
| - 'doc/**' | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| paths-ignore: | |
| - '**.md' | |
| - 'doc/**' | |
| jobs: | |
| lint: | |
| name: Check format | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Check Fortran source formatting | |
| run: python .github/common/fortran_format_check.py | |
| build: | |
| name: Build | |
| runs-on: ubuntu-22.04 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| FC: gfortran | |
| GCC_V: 13 | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| - name: Setup gfortran ${{ env.GCC_V }} | |
| uses: awvwgk/setup-fortran@main | |
| with: | |
| compiler: gcc | |
| version: ${{ env.GCC_V }} | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Meson setup | |
| run: meson setup builddir -Ddebug=false -Dwerror=true | |
| - name: Meson compile | |
| run: meson compile -C builddir | |
| - name: Show build log | |
| if: failure() | |
| run: cat builddir/meson-logs/meson-log.txt | |
| - name: Meson test | |
| run: meson test --verbose --no-rebuild -C builddir | |
| smoke_test: | |
| name: Smoke test | |
| runs-on: ubuntu-22.04 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| FC: gfortran | |
| GCC_V: 13 | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: modflow6 | |
| - name: Setup GNU Fortran ${{ env.GCC_V }} | |
| uses: awvwgk/setup-fortran@main | |
| with: | |
| compiler: gcc | |
| version: ${{ env.GCC_V }} | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: modflow6/environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Build modflow6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| - name: Show build log | |
| if: failure() | |
| working-directory: modflow6 | |
| run: cat builddir/meson-logs/meson-log.txt | |
| - name: Unit test programs | |
| working-directory: modflow6 | |
| run: meson test --verbose --no-rebuild -C builddir | |
| - name: Update flopy | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Get executables | |
| working-directory: modflow6/autotest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations 0 get_exes.py | |
| - name: Test programs | |
| working-directory: modflow6/autotest | |
| run: | | |
| if [ "${{ github.ref_name }}" == "master" ]; then | |
| pytest -v -n auto --durations 0 -m "not slow and not regression and not developmode" | |
| else | |
| pytest -v -n auto --durations 0 -S | |
| fi | |
| netcdf_test: | |
| name: netcdf4 testing | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-22.04 ] | |
| hdf5: [ 1.12.2 ] | |
| #netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ] | |
| netcdf: [ v4.9.0, main ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| FC: gfortran | |
| GCC_V: 12 | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: modflow6 | |
| - name: Setup GNU Fortran ${{ env.GCC_V }} | |
| uses: awvwgk/setup-fortran@main | |
| with: | |
| compiler: gcc | |
| version: ${{ env.GCC_V }} | |
| # - name: Configure environment | |
| # if: runner.os == 'Linux' | |
| # run: | | |
| # echo "PKG_CONFIG_PATH=$GITHUB_WORKSPACE/petsc/linux-gnu/lib/pkgconfig" >> $GITHUB_ENV | |
| # echo "$GITHUB_WORKSPACE/petsc/linux-gnu/bin" >> $GITHUB_PATH | |
| # - name: Configure PETSc | |
| # if: runner.os == 'Linux' | |
| # working-directory: petsc | |
| # run: | | |
| # sudo ./configure PETSC_ARCH=linux-gnu --download-fblaslapack --download-openmpi | |
| # sudo make all | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev libzstd-dev gfortran | |
| # run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev gfortran | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: | | |
| echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
| echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| ### | |
| # Installing libhdf4 and libhdf5 | |
| ### | |
| - name: Cache libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| id: cache-hdf5 | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| - name: Build libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| #pushd $HOME | |
| cd $HOME | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| #pushd hdf5-${{ matrix.hdf5 }} | |
| cd hdf5-${{ matrix.hdf5 }} | |
| ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --enable-hl --with-szlib | |
| make -j | |
| make install -j | |
| #popd | |
| - name: Build step 2 libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| if [[ ${{ matrix.netcdf }} != "main" ]]; then | |
| git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
| #pushd netcdf-c | |
| cd netcdf-c | |
| autoreconf -if | |
| CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| make -j install | |
| #popd | |
| fi | |
| #popd | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: | | |
| echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
| echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf}}" >> $GITHUB_ENV | |
| echo "HDF5_PLUGIN_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| echo "HDF5_PLUGIN_DIR=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| ### | |
| # Fetch Cache | |
| ### | |
| # - name: Fetch HDF Cache | |
| # id: cache-hdf5 | |
| # uses: actions/cache@v2 | |
| # with: | |
| # path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # | |
| # - name: Check Cache | |
| # shell: bash -l {0} | |
| # run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{matrix.netcdf}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Build netcdf-c if main | |
| run: | | |
| #pushd $HOME | |
| find . | grep -i CMakeLists.txt | |
| cd $HOME | |
| git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
| #pushd netcdf-c | |
| cd netcdf-c | |
| autoreconf -if | |
| CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --with-plugin-dir=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib | |
| make -j install | |
| #popd | |
| #popd | |
| if: ${{ matrix.netcdf }} == "main" | |
| - name: Perform out-of-directory build | |
| shell: bash -l {0} | |
| run: | | |
| #ls -l | |
| #ls -l ${CMAKE_PREFIX_PATH} | |
| #mkdir build | |
| #cd build | |
| #LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake $(pwd)/../ -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} | |
| #- name: "Create build directory and run CMake" | |
| pwd | |
| find . | grep -i CMakeLists.txt | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake -S netcdf-c -B build -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} | |
| #- name: "Build Project" | |
| #LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake --build build --target all --config Release -- -j4 | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: | | |
| #cd build | |
| #cat libnetcdff.settings | |
| find . | grep -i libnetcdff.settings | |
| - name: Build All | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 | |
| if: ${{ success() }} | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: modflow6/environment.yml | |
| init-shell: >- | |
| bash | |
| powershell | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Build modflow6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| - name: Show Meson logs | |
| if: failure() | |
| working-directory: modflow6 | |
| run: cat builddir/meson-logs/meson-log.txt | |
| - name: Update flopy | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Get executables | |
| working-directory: modflow6/autotest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations 0 get_exes.py | |
| - name: Test programs | |
| working-directory: modflow6/autotest | |
| env: | |
| REPOS_PATH: ${{ github.workspace }} | |
| run: | | |
| branch="${{ github.ref_name }}" | |
| marker="not large" | |
| markers=$([ "$branch" == "master" ] && echo "$marker and not developmode" || echo "$marker") | |
| pytest -v -n auto --durations 0 -m "$markers" | |
| netcdf_test_win: | |
| name: netcdf4 testing | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ windows-2022 ] | |
| hdf5: [ 1.12.2 ] | |
| #netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ] | |
| netcdf: [ v4.9.0, main ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| FC: gfortran | |
| GCC_V: 12 | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: modflow6 | |
| - name: Setup MSYS2 | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| install: | | |
| git | |
| make | |
| mingw-w64-x86_64-gcc | |
| mingw-w64-x86_64-python | |
| mingw-w64-x86_64-python-pip | |
| mingw-w64-x86_64-python-pytest | |
| # - name: Setup MPI | |
| # if: runner.os == 'Windows' | |
| # uses: mpi4py/setup-mpi@v1 | |
| # with: | |
| # mpi: msmpi | |
| - name: Setup GNU Fortran ${{ env.GCC_V }} | |
| uses: awvwgk/setup-fortran@main | |
| with: | |
| compiler: gcc | |
| version: ${{ env.GCC_V }} | |
| # - name: Configure PETSc | |
| # if: runner.os == 'Windows' | |
| # shell: msys2 {0} | |
| # working-directory: petsc | |
| # run: | | |
| # pacman -Syu | |
| # pacman -Sy --noconfirm autoconf automake-wrapper bison bsdcpio make git \ | |
| # mingw-w64-x86_64-toolchain patch python flex \ | |
| # pkg-config pkgfile tar unzip mingw-w64-x86_64-cmake \ | |
| # mingw-w64-x86_64-msmpi mingw-w64-x86_64-openblas mingw-w64-x86_64-jq | |
| # /usr/bin/python ./configure --with-mpiexec='/C/Program\ Files/Microsoft\ MPI/Bin/mpiexec' --with-shared-libraries=0 | |
| # make all | |
| - name: Install System dependencies | |
| shell: msys2 {0} | |
| run: | | |
| pacman -Syu | |
| #pacman -Sy --noconfirm libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev libzstd-dev | |
| pacman -Sy --noconfirm --needed automake autoconf libxml2 libtool git wget curl bzip2 m4 flex bison cmake tar base-devel | |
| #pacman -Sy --noconfirm --needed base-devel automake autoconf m4 flex bison cmake base-devel | |
| ### | |
| # Installing libhdf4 and libhdf5 | |
| ### | |
| # - name: Cache libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # id: cache-hdf5 | |
| # uses: actions/cache@v2 | |
| # with: | |
| # path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| - name: Build libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| shell: msys2 {0} | |
| run: | | |
| #pacman -Sy --noconfirm mingw-w64-x86_64-hdf5 | |
| pacman -Sy --noconfirm mingw-w64-x86_64-netcdf | |
| # #pushd $HOME | |
| # cd $HOME | |
| # wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| # tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| # #pushd hdf5-${{ matrix.hdf5 }} | |
| # cd hdf5-${{ matrix.hdf5 }} | |
| # ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --enable-hl --with-szlib | |
| # make -j | |
| # make install -j | |
| # #popd | |
| # - name: Make libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| # shell: msys2 {0} | |
| # run: | | |
| # if [[ ${{ matrix.netcdf }} != "main" ]]; then | |
| # git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
| # #pushd netcdf-c | |
| # cd netcdf-c | |
| # autoreconf -if | |
| # CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # make -j install | |
| # #popd | |
| # fi | |
| # #popd | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| ### | |
| # Fetch Cache | |
| ### | |
| # - name: Fetch HDF Cache | |
| # id: cache-hdf5 | |
| # uses: actions/cache@v2 | |
| # with: | |
| # path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # | |
| # - name: Check Cache | |
| # shell: bash -l {0} | |
| # run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{matrix.netcdf}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| # - name: Build netcdf-c if main | |
| # shell: msys2 {0} | |
| # run: | | |
| # #pushd $HOME | |
| # cd $HOME | |
| # git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
| # #pushd netcdf-c | |
| # cd netcdf-c | |
| # autoreconf -if | |
| # CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --with-plugin-dir=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib | |
| # make -j install | |
| # #popd | |
| # #popd | |
| # if: ${{ matrix.netcdf }} == "main" | |
| - name: Perform out-of-directory build | |
| #shell: bash -l {0} | |
| shell: msys2 {0} | |
| run: | | |
| #ls -l | |
| #ls -l ${CMAKE_PREFIX_PATH} | |
| #mkdir build | |
| #cd build | |
| #LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake $(pwd)/../ -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} | |
| #- name: "Create build directory and run CMake" | |
| pwd | |
| find . | grep -i CMakeLists.txt | |
| git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
| #pushd netcdf-c | |
| cd netcdf-c | |
| autoreconf -if | |
| CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --with-plugin-dir=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib | |
| make -j install | |
| cd .. | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake -S netcdf-c -B build -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} | |
| #- name: "Build Project" | |
| #LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake --build build --target all --config Release -- -j4 | |
| - name: Print Summary | |
| shell: msys2 {0} | |
| #shell: bash -l {0} | |
| run: | | |
| #cd build | |
| #cat libnetcdff.settings | |
| find . | grep -i libnetcdff.settings | |
| - name: Build All | |
| shell: msys2 {0} | |
| #shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 | |
| if: ${{ success() }} | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: modflow6/environment.yml | |
| init-shell: >- | |
| bash | |
| powershell | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Build modflow6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| - name: Show Meson logs | |
| if: failure() | |
| working-directory: modflow6 | |
| run: cat builddir/meson-logs/meson-log.txt | |
| - name: Update flopy | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Get executables | |
| working-directory: modflow6/autotest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations 0 get_exes.py | |
| - name: Test programs | |
| working-directory: modflow6/autotest | |
| env: | |
| REPOS_PATH: ${{ github.workspace }} | |
| run: | | |
| branch="${{ github.ref_name }}" | |
| marker="not large" | |
| markers=$([ "$branch" == "master" ] && echo "$marker and not developmode" || echo "$marker") | |
| pytest -v -n auto --durations 0 -m "$markers" | |
| netcdf_test_mac: | |
| name: netcdf4 testing | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ macos-12 ] | |
| hdf5: [ 1.12.2 ] | |
| #netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ] | |
| netcdf: [ v4.9.0, main ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| FC: gfortran | |
| GCC_V: 12 | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: modflow6 | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "FCFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
| - run: echo "FFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
| - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
| - run: echo "CPPFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
| - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| - run: echo "DYLD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| - run: echo "PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/bin:${PATH}" >> $GITHUB_ENV | |
| - run: brew install automake libaec | |
| ### | |
| # Installing libhdf4 and libhdf5 | |
| ### | |
| - name: Cache libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| id: cache-hdf5 | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| - name: Build libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| #pushd $HOME | |
| cd $HOME | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| #pushd hdf5-${{ matrix.hdf5 }} | |
| cd hdf5-${{ matrix.hdf5 }} | |
| ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --enable-hl --with-szlib | |
| make -j | |
| make install -j | |
| #popd | |
| - name: Build 2 libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c | |
| #pushd netcdf-c | |
| cd netcdf-c | |
| autoreconf -if | |
| CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| make -j | |
| make install -j | |
| #popd | |
| #popd | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "FCFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
| - run: echo "FFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
| - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV | |
| - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV | |
| - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf}}" >> $GITHUB_ENV | |
| - run: brew install automake | |
| ### | |
| # Fetch Cache | |
| ### | |
| # - name: Fetch HDF Cache | |
| # id: cache-hdf5 | |
| # uses: actions/cache@v2 | |
| # with: | |
| # path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }} | |
| # - name: Check Cache | |
| # shell: bash -l {0} | |
| # run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{matrix.netcdf}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Perform out-of-directory build | |
| shell: bash -l {0} | |
| run: | | |
| #mkdir build | |
| #cd build | |
| #LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} | |
| #- name: "Create build directory and run CMake" | |
| pwd | |
| find . | grep -i CMakeLists.txt | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake -S netcdf-c -B build -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} | |
| #- name: "Build Project" | |
| #LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake --build build --target all --config Release -- -j4 | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: | | |
| #cd build | |
| #cat libnetcdff.settings | |
| find . | grep -i libnetcdff.settings | |
| - name: Build All | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 1 . | |
| if: ${{ success() }} | |
| - name: Look at LastTest.log if error | |
| shell: bash -l {0} | |
| run: | | |
| cat /home/runner/work/netcdf-fortran/netcdf-fortran/build/Testing/Temporary/LastTest.log | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --rerun-failed --output-on-failure | |
| if: ${{ failure() }} | |
| test_gfortran: | |
| name: Test (gfortran) | |
| needs: | |
| - lint | |
| - build | |
| - smoke_test | |
| - netcdf_test | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # compatible combinations from https://github.com/awvwgk/setup-fortran#runner-compatibility | |
| include: | |
| - {os: ubuntu-20.04, gcc_v: 7, test: false} | |
| - {os: ubuntu-20.04, gcc_v: 8, test: false} | |
| - {os: ubuntu-20.04, gcc_v: 9, test: false} | |
| - {os: ubuntu-20.04, gcc_v: 10, test: false} | |
| - {os: ubuntu-20.04, gcc_v: 11, test: false} | |
| - {os: ubuntu-22.04, gcc_v: 12, test: false} | |
| # only run autotests on latest version on each platform | |
| - {os: ubuntu-22.04, gcc_v: 13, test: true} | |
| - {os: macos-12, gcc_v: 7, test: false} | |
| - {os: macos-12, gcc_v: 8, test: false} | |
| - {os: macos-12, gcc_v: 9, test: false} | |
| - {os: macos-12, gcc_v: 10, test: false} | |
| - {os: macos-12, gcc_v: 11, test: false} | |
| - {os: macos-12, gcc_v: 12, test: false} | |
| - {os: macos-12, gcc_v: 13, test: true} | |
| - {os: windows-2022, gcc_v: 9, test: false} | |
| - {os: windows-2022, gcc_v: 10, test: false} | |
| - {os: windows-2022, gcc_v: 11, test: false} | |
| - {os: windows-2022, gcc_v: 12, test: true} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| FC: gfortran | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: modflow6 | |
| - name: Checkout modflow6-testmodels | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: MODFLOW-USGS/modflow6-testmodels | |
| path: modflow6-testmodels | |
| - name: Checkout modflow6-examples | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: MODFLOW-USGS/modflow6-examples | |
| path: modflow6-examples | |
| - name: Setup GNU Fortran ${{ matrix.gcc_v }} | |
| uses: awvwgk/setup-fortran@main | |
| with: | |
| compiler: gcc | |
| version: ${{ matrix.gcc_v }} | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: modflow6/environment.yml | |
| init-shell: >- | |
| bash | |
| powershell | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Build modflow6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| - name: Show build log | |
| if: failure() | |
| working-directory: modflow6 | |
| run: cat builddir/meson-logs/meson-log.txt | |
| - name: Unit test programs | |
| working-directory: modflow6 | |
| run: meson test --verbose --no-rebuild -C builddir | |
| - name: Update flopy | |
| if: matrix.test | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Get executables | |
| if: matrix.test | |
| working-directory: modflow6/autotest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: | | |
| pytest -v --durations 0 get_exes.py | |
| - name: Test modflow6 | |
| if: matrix.test | |
| working-directory: modflow6/autotest | |
| env: | |
| REPOS_PATH: ${{ github.workspace }} | |
| run: | | |
| if [ "${{ github.ref_name }}" == "master" ]; then | |
| pytest -v -n auto --durations 0 -m "not large and not developmode" | |
| else | |
| pytest -v -n auto --durations 0 -m "not large" | |
| fi | |
| - name: Checkout usgslatex | |
| if: matrix.test && runner.os == 'Linux' | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: MODFLOW-USGS/usgslatex | |
| path: usgslatex | |
| - name: Install TeX Live | |
| if: matrix.test && runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt install texlive-science \ | |
| texlive-latex-extra \ | |
| texlive-font-utils \ | |
| texlive-fonts-recommended \ | |
| texlive-fonts-extra | |
| - name: Install USGS LaTeX style files and Univers font | |
| if: matrix.test && runner.os == 'Linux' | |
| working-directory: usgslatex/usgsLaTeX | |
| run: sudo ./install.sh --all-users | |
| - name: Test distribution scripts | |
| if: matrix.test | |
| working-directory: modflow6/distribution | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations 0 | |
| test_intel_fortran: | |
| name: Test (Intel) | |
| needs: | |
| - lint | |
| - build | |
| - smoke_test | |
| - netcdf_test | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| ### ifx | |
| ## 2022.2.x autotests disabled | |
| # - mf5to6 test_evt: failure to converge | |
| # - mf6 Keating_[disu_]dev: bad head comparison | |
| - {os: ubuntu-22.04, compiler: intel, version: 2022.2.1, test: false} | |
| - {os: ubuntu-22.04, compiler: intel, version: 2022.2, test: false} | |
| ## 2021.1 segfault in meson serial sim test | |
| # - {os: ubuntu-22.04, compiler: intel, version: 2022.1, test: false} | |
| ## 2022.0 & 2021.[1,2,4] segfault at compile time | |
| # - {os: ubuntu-22.04, compiler: intel, version: "2022.0", test: false} | |
| # - {os: ubuntu-22.04, compiler: intel, version: 2021.4, test: false} | |
| # - {os: ubuntu-22.04, compiler: intel, version: 2021.2, test: false} | |
| # - {os: ubuntu-22.04, compiler: intel, version: 2021.1, test: false} | |
| ## ifx not yet supported on macOS | |
| # - {os: macos-12, compiler: intel, version: 2023.2, test: true} | |
| ## 2023.[0,1] fail to compile | |
| # - {os: windows-2022, compiler: intel, version: 2023.1, test: false} | |
| # - {os: windows-2022, compiler: intel, version: "2023.0", test: false} | |
| - {os: windows-2022, compiler: intel, version: 2022.2, test: false} | |
| ## 2022.1 fail to link | |
| # - {os: windows-2022, compiler: intel, version: 2022.1, test: false} | |
| ### ifort | |
| ## only autotest latest on each platform | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: "2021.10", test: false} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.9, test: false} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.8, test: false} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.7, test: true} | |
| - {os: ubuntu-22.04, compiler: intel-classic, version: 2021.6, test: false} | |
| - {os: macos-12, compiler: intel-classic, version: "2021.10", test: false} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.9, test: false} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.8, test: false} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.7, test: true} | |
| - {os: macos-12, compiler: intel-classic, version: 2021.6, test: false} | |
| - {os: windows-2022, compiler: intel-classic, version: "2021.10", test: false} | |
| - {os: windows-2022, compiler: intel-classic, version: 2021.9, test: false} | |
| - {os: windows-2022, compiler: intel-classic, version: 2021.8, test: false} | |
| - {os: windows-2022, compiler: intel-classic, version: 2021.7, test: true} | |
| - {os: windows-2022, compiler: intel-classic, version: 2021.6, test: false} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: modflow6 | |
| - name: Checkout modflow6-testmodels | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: MODFLOW-USGS/modflow6-testmodels | |
| path: modflow6-testmodels | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: modflow6/environment.yml | |
| init-shell: >- | |
| bash | |
| powershell | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Setup Intel Fortran | |
| uses: awvwgk/setup-fortran@main | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| version: ${{ matrix.version }} | |
| - name: Update version files | |
| working-directory: modflow6/distribution | |
| run: python update_version.py | |
| - name: Build modflow6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| - name: Show build log | |
| if: failure() | |
| working-directory: modflow6 | |
| run: cat builddir/meson-logs/meson-log.txt | |
| - name: Unit test programs | |
| working-directory: modflow6 | |
| run: meson test --verbose --no-rebuild -C builddir | |
| - name: Update flopy | |
| if: matrix.test | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Get executables | |
| if: matrix.test | |
| working-directory: modflow6/autotest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations 0 get_exes.py | |
| - name: Test programs | |
| if: matrix.test | |
| working-directory: modflow6/autotest | |
| env: | |
| REPOS_PATH: ${{ github.workspace }} | |
| run: | | |
| if [ "${{ github.ref_name }}" == "master" ]; then | |
| pytest -v -n auto --durations 0 -m "not large and not developmode" | |
| else | |
| pytest -v -n auto --durations 0 -m "not large" | |
| fi | |
| - name: Test scripts | |
| if: matrix.test | |
| working-directory: modflow6/distribution | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations 0 | |
| parallel_test: | |
| name: Parallel testing | |
| needs: | |
| - lint | |
| - build | |
| - smoke_test | |
| - netcdf_test | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-22.04, macos-12 ] #, windows-2022 ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| FC: gfortran | |
| GCC_V: 12 | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: modflow6 | |
| - name: Setup MSYS2 | |
| if: runner.os == 'Windows' | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| install: | | |
| git | |
| make | |
| mingw-w64-x86_64-gcc | |
| mingw-w64-x86_64-python | |
| mingw-w64-x86_64-python-pip | |
| mingw-w64-x86_64-python-pytest | |
| - name: Setup MPI | |
| if: runner.os == 'Windows' | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: msmpi | |
| - name: Setup GNU Fortran ${{ env.GCC_V }} | |
| uses: awvwgk/setup-fortran@main | |
| with: | |
| compiler: gcc | |
| version: ${{ env.GCC_V }} | |
| - name: Cache PETSc | |
| id: cache-petsc | |
| uses: actions/cache@v3 | |
| with: | |
| path: petsc | |
| key: ${{ runner.os }}-petsc | |
| - name: Clone PETSc | |
| if: runner.os != 'Windows' && steps.cache-petsc.outputs.cache-hit != 'true' | |
| run: git clone -b release https://gitlab.com/petsc/petsc.git petsc | |
| - name: Download PETSc | |
| if: runner.os == 'Windows' | |
| run: | | |
| curl https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.18.4.tar.gz -O -J | |
| mkdir petsc | |
| tar -xzf petsc-3.18.4.tar.gz -C petsc --strip-components=1 | |
| - name: Configure environment | |
| if: runner.os == 'Linux' | |
| run: | | |
| echo "PKG_CONFIG_PATH=$GITHUB_WORKSPACE/petsc/linux-gnu/lib/pkgconfig" >> $GITHUB_ENV | |
| echo "$GITHUB_WORKSPACE/petsc/linux-gnu/bin" >> $GITHUB_PATH | |
| - name: Configure environment | |
| if: runner.os == 'macOS' | |
| run: | | |
| echo "PKG_CONFIG_PATH=$GITHUB_WORKSPACE/petsc/arch-darwin-gcc-debug/lib/pkgconfig" >> $GITHUB_ENV | |
| echo "$GITHUB_WORKSPACE/petsc/arch-darwin-gcc-debug/bin" >> $GITHUB_PATH | |
| - name: Configure PETSc | |
| if: runner.os == 'Linux' | |
| working-directory: petsc | |
| run: | | |
| sudo ./configure PETSC_ARCH=linux-gnu --download-fblaslapack --download-openmpi | |
| sudo make all | |
| - name: Configure PETSc | |
| if: runner.os == 'macOS' | |
| working-directory: petsc | |
| run: | | |
| sudo ./configure PETSC_DIR="$GITHUB_WORKSPACE/petsc" PETSC_ARCH=arch-darwin-gcc-debug --download-fblaslapack --download-openmpi | |
| sudo make all | |
| - name: Configure PETSc | |
| if: runner.os == 'Windows' | |
| shell: msys2 {0} | |
| working-directory: petsc | |
| run: | | |
| pacman -Syu | |
| pacman -Sy --noconfirm autoconf automake-wrapper bison bsdcpio make git \ | |
| mingw-w64-x86_64-toolchain patch python flex \ | |
| pkg-config pkgfile tar unzip mingw-w64-x86_64-cmake \ | |
| mingw-w64-x86_64-msmpi mingw-w64-x86_64-openblas mingw-w64-x86_64-jq | |
| /usr/bin/python ./configure --with-mpiexec='/C/Program\ Files/Microsoft\ MPI/Bin/mpiexec' --with-shared-libraries=0 | |
| make all | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: modflow6/environment.yml | |
| init-shell: >- | |
| bash | |
| powershell | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Build modflow6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir -Ddebug=false -Dparallel=true --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| meson test --verbose --no-rebuild -C builddir | |
| - name: Show Meson logs | |
| if: failure() | |
| working-directory: modflow6 | |
| run: cat builddir/meson-logs/meson-log.txt | |
| - name: Update flopy | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Get executables | |
| working-directory: modflow6/autotest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations 0 get_exes.py | |
| - name: Test programs (parallel) | |
| working-directory: modflow6/autotest | |
| env: | |
| REPOS_PATH: ${{ github.workspace }} | |
| run: | | |
| branch="${{ github.ref_name }}" | |
| marker="not large" | |
| markers=$([ "$branch" == "master" ] && echo "$marker and not developmode" || echo "$marker") | |
| pytest -v -n auto --parallel --durations 0 -m "$markers" | |