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mjreno authored and mjreno committed Sep 18, 2023
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195 changes: 0 additions & 195 deletions .github/workflows/ci2.yml
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Expand Up @@ -187,201 +187,6 @@ jobs:
markers=$([ "$branch" == "master" ] && echo "$marker and not developmode" || echo "$marker")
pytest -v -n auto --durations 0 -m "$markers"
netcdf_test_mac:
name: netcdf4 testing
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
# os: [ macos-12 ]
# hdf5: [ 1.12.2 ]
# #netcdf: [ v4.9.0 ]
# netcdf: [ main ]
os: []
hdf5: []
netcdf: []
defaults:
run:
shell: bash -l {0}
env:
FC: gfortran
GCC_V: 13
steps:

- name: Checkout modflow6
uses: actions/checkout@v3
with:
path: modflow6

- name: Setup gfortran ${{ env.GCC_V }}
uses: awvwgk/setup-fortran@main
with:
compiler: gcc
version: ${{ env.GCC_V }}

###
# Set Environmental Variables
###
- run: echo "FCFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "FFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV

- run: echo "CPPFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "DYLD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/bin:${PATH}" >> $GITHUB_ENV

- run: brew install automake libaec
###
# Installing libhdf4 and libhdf5
###
- name: Cache libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }}
id: cache-hdf5
uses: actions/cache@v2
with:
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}


- name: Build libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }}
#if: steps.cache-hdf5.outputs.cache-hit != 'true'
run: |
cd $HOME
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
cd hdf5-${{ matrix.hdf5 }}
./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --enable-hl --with-szlib
make -j
make install -j
- name: Build 2 libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }}
#if: steps.cache-hdf5.outputs.cache-hit != 'true'
run: |
cd $HOME
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c
cd netcdf-c
autoreconf -if
CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}
make -j
make install -j
- run: echo "FCFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "FFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV

- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf}}" >> $GITHUB_ENV

- run: brew install automake

- name: Perform out-of-directory build
shell: bash -l {0}
run: |
cd $HOME
pwd
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake -S netcdf-c -B build -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH}
# - name: Print Summary
# shell: bash -l {0}
# run: |
# #cd build
# #cat libnetcdff.settings
# find . | grep -i libnetcdff.settings

- name: Build All
shell: bash -l {0}
run: |
cd $HOME
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12
if: ${{ success() }}

- name: Run Tests
shell: bash -l {0}
run: |
cd $HOME
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 1 .
if: ${{ success() }}

- name: Look at LastTest.log if error
shell: bash -l {0}
run: |
cat /home/runner/work/netcdf-fortran/netcdf-fortran/build/Testing/Temporary/LastTest.log
cd build
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --rerun-failed --output-on-failure
if: ${{ failure() }}

- name: Setup Micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: modflow6/environment.yml
create-args: >-
pkg-config
init-shell: >-
bash
powershell
cache-environment: true
cache-downloads: true

- name: Build modflow6
working-directory: modflow6
run: |
find $HOME/environments | grep -i netcdf
nf-config --all
nc-config --all
nc-config --libdir
echo "PKG_CONFIG_PATH=$(nc-config --libdir)" >> $GITHUB_ENV
meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin
meson install -C builddir
- name: Show Meson logs
if: failure()
working-directory: modflow6
run: cat builddir/meson-logs/meson-log.txt

- name: Check exe
working-directory: modflow6/autotest
env:
REPOS_PATH: ${{ github.workspace }}
run: |
echo "LD_LIBRARY_PATH:"
echo $LD_LIBRARY_PATH
echo "PATH:"
echo $PATH
ls -l /Users/runner/work/modflow6/modflow6/modflow6/bin
echo "FILE:"
file /Users/runner/work/modflow6/modflow6/modflow6/bin/mf6
echo "LDD1:"
ldd /Users/runner/work/modflow6/modflow6/modflow6/bin/mf6
#/d/a/modflow6/modflow6/modflow6/bin/mf6 --version
#which mf6
#mf6
/Users/runner/work/modflow6/modflow6/modflow6/mf6 --version
- name: Update flopy
working-directory: modflow6/autotest
run: python update_flopy.py

- name: Get executables
working-directory: modflow6/autotest
env:
GITHUB_TOKEN: ${{ github.token }}
run: pytest -v --durations 0 get_exes.py

- name: Test programs
working-directory: modflow6/autotest
env:
REPOS_PATH: ${{ github.workspace }}
run: |
branch="${{ github.ref_name }}"
marker="not large"
markers=$([ "$branch" == "master" ] && echo "$marker and not developmode" || echo "$marker")
pytest -v -n auto --durations 0 -m "$markers"
parallel_test:
name: Parallel testing
#needs:
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