compat

Manifest.toml

@@ -11,15 +11,21 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[CategoricalArrays]]
 deps = ["DataAPI", "Future", "JSON", "Missings", "Printf", "Statistics", "StructTypes", "Unicode"]
-git-tree-sha1 = "2ac27f59196a68070e132b25713f9a5bbc5fa0d2"
+git-tree-sha1 = "5861101791fa76fafe8dddefd70ffbfe4e33ecae"
 uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
-version = "0.8.3"
+version = "0.9.0"
+
+[[ChainRulesCore]]
+deps = ["LinearAlgebra", "MuladdMacro", "SparseArrays"]
+git-tree-sha1 = "bd7db5cdb38fe787892fc7af2e006dac34e62ddd"
+uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+version = "0.9.23"
 
 [[Compat]]
 deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "a706ff10f1cd8dab94f59fd09c0e657db8e77ff0"
+git-tree-sha1 = "919c7f3151e79ff196add81d7f4e45d91bbf420b"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.23.0"
+version = "3.25.0"
 
 [[CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -33,16 +39,21 @@ git-tree-sha1 = "c0647249d785f1d5139c0cc96db8f6b32f7ec416"
 uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d"
 version = "1.5.0"
 
+[[Crayons]]
+git-tree-sha1 = "3f71217b538d7aaee0b69ab47d9b7724ca8afa0d"
+uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
+version = "4.0.4"
+
 [[DataAPI]]
 git-tree-sha1 = "ad84f52c0b8f05aa20839484dbaf01690b41ff84"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
 version = "1.4.0"
 
 [[DataFrames]]
-deps = ["CategoricalArrays", "Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "Missings", "PooledArrays", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
-git-tree-sha1 = "ecd850f3d2b815431104252575e7307256121548"
+deps = ["CategoricalArrays", "Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
+git-tree-sha1 = "b46e1deb4592a5df7416b10dfcd6b01fb194ab9a"
 uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-version = "0.21.8"
+version = "0.22.2"
 
 [[DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
@@ -67,6 +78,12 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
+[[Formatting]]
+deps = ["Printf"]
+git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8"
+uuid = "59287772-0a20-5a39-b81b-1366585eb4c0"
+version = "0.4.2"
+
 [[Future]]
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
@@ -124,6 +141,11 @@ version = "0.4.4"
 [[Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
+[[MuladdMacro]]
+git-tree-sha1 = "c6190f9a7fc5d9d5915ab29f2134421b12d24a68"
+uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221"
+version = "0.2.2"
+
 [[OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "9db77584158d0ab52307f8c04f8e7c08ca76b5b3"
@@ -137,9 +159,9 @@ version = "1.3.2"
 
 [[Parsers]]
 deps = ["Dates"]
-git-tree-sha1 = "6fa4202675c05ba0f8268a6ddf07606350eda3ce"
+git-tree-sha1 = "50c9a9ed8c714945e01cd53a21007ed3865ed714"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "1.0.11"
+version = "1.0.15"
 
 [[Pkg]]
 deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
@@ -151,15 +173,21 @@ git-tree-sha1 = "b1333d4eced1826e15adbdf01a4ecaccca9d353c"
 uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
 version = "0.5.3"
 
+[[PrettyTables]]
+deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"]
+git-tree-sha1 = "237170206bf38a66fee4d845f4ae57f63788eeb0"
+uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
+version = "0.10.1"
+
 [[Printf]]
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
 [[RCall]]
 deps = ["CategoricalArrays", "Conda", "DataFrames", "DataStructures", "Dates", "Libdl", "Missings", "REPL", "Random", "Requires", "StatsModels", "WinReg"]
-git-tree-sha1 = "3a0e886953024454e9f489e309568e134dc7e6ed"
+git-tree-sha1 = "9b85a9fd61d9ad3986e35da8b6fa7dc6d2354b75"
 uuid = "6f49c342-dc21-5d91-9882-a32aef131414"
-version = "0.13.9"
+version = "0.13.10"
 
 [[REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets"]
@@ -177,9 +205,9 @@ version = "0.2.0"
 
 [[Requires]]
 deps = ["UUIDs"]
-git-tree-sha1 = "28faf1c963ca1dc3ec87f166d92982e3c4a1f66d"
+git-tree-sha1 = "cfbac6c1ed70c002ec6361e7fd334f02820d6419"
 uuid = "ae029012-a4dd-5104-9daa-d747884805df"
-version = "1.1.0"
+version = "1.1.2"
 
 [[Rmath]]
 deps = ["Random", "Rmath_jll"]
@@ -222,10 +250,10 @@ deps = ["LinearAlgebra", "Random"]
 uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[SpecialFunctions]]
-deps = ["OpenSpecFun_jll"]
-git-tree-sha1 = "d8d8b8a9f4119829410ecd706da4cc8594a1e020"
+deps = ["ChainRulesCore", "OpenSpecFun_jll"]
+git-tree-sha1 = "34d6e428b902ad143a14206940c2bcaf33a6cafd"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "0.10.3"
+version = "1.2.0"
 
 [[Statistics]]
 deps = ["LinearAlgebra", "SparseArrays"]
@@ -239,9 +267,9 @@ version = "0.33.2"
 
 [[StatsFuns]]
 deps = ["Rmath", "SpecialFunctions"]
-git-tree-sha1 = "04a5a8e6ab87966b43f247920eab053fd5fdc925"
+git-tree-sha1 = "3b9f665c70712af3264b61c27a7e1d62055dafd1"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "0.9.5"
+version = "0.9.6"
 
 [[StatsModels]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"]
@@ -251,9 +279,9 @@ version = "0.6.15"
 
 [[StructTypes]]
 deps = ["Dates", "UUIDs"]
-git-tree-sha1 = "1ed04f622a39d2e5a6747c3a70be040c00333933"
+git-tree-sha1 = "d94235fcdc4a09649f263365c5f7e4ed4ba6ed34"
 uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
-version = "1.1.0"
+version = "1.2.1"
 
 [[TableTraits]]
 deps = ["IteratorInterfaceExtensions"]
@@ -263,9 +291,9 @@ version = "1.0.0"
 
 [[Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
-git-tree-sha1 = "24a584cf65e2cfabdadc21694fb69d2e74c82b44"
+git-tree-sha1 = "240d19b8762006ff04b967bdd833269ad642d550"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.1.0"
+version = "1.2.2"
 
 [[Test]]
 deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]

Project.toml

@@ -1,8 +1,8 @@
 name = "SeuratRDS"
 uuid = "dc2ff7d6-b19f-434a-a8eb-f50e20111c56"
 authors = ["Matt Karikomi <[email protected]> and contributors"]
-version = "1.0.0"
 repo = "https://github.com/mkarikom/SeuratRDS.jl.git"
+version = "1.0.1"
 
 [deps]
 Conda = "8f4d0f93-b110-5947-807f-2305c1781a2d"
@@ -13,6 +13,9 @@ Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 RCall = "6f49c342-dc21-5d91-9882-a32aef131414"
 
 [compat]
+Conda = "1.5"
+DataFrames = "0.21, 0.22"
+RCall = "0.13"
 julia = "1.5"
 
 [extras]