FL support

.github/workflows/train-ci.yml

@@ -0,0 +1,41 @@
+name: FL Integration workflow
+
+on: pull_request
+
+jobs:
+  setup:
+    name: fl-integration-test
+    runs-on: ubuntu-latest
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v2
+
+    - name: Set up Python 3.9
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.9'
+
+    - name: Install dependencies
+      working-directory: .
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e cli/
+        pip install -r cli/test-requirements.txt
+        pip install -r server/requirements.txt
+        pip install -r server/test-requirements.txt
+
+    - name: Set server environment vars
+      working-directory: ./server
+      run: cp .env.local.local-auth .env
+
+    - name: Run django server in background with generated certs
+      working-directory: ./server
+      run: sh setup-dev-server.sh & sleep 6
+
+    - name: Run server integration tests
+      working-directory: ./server
+      run: python seed.py --cert cert.crt
+
+    - name: Run client integration tests
+      working-directory: .
+      run: sh cli/cli_tests_training.sh -f

.gitignore

@@ -147,3 +147,10 @@ cython_debug/
 # Dev Environment Specific
 .vscode
 .venv
+server/keys
+
+# exclude fl example
+!examples/fl/mock_cert/project/ca/root.key
+!examples/fl/mock_cert/project/ca/cert/root.crt
+!flca/dev_assets/intermediate_ca.crt
+!flca/dev_assets/root_ca.crt

cli/cli_tests.sh

@@ -5,7 +5,6 @@
 ################### Start Testing ########################
 ##########################################################
 
-
 ##########################################################
 echo "=========================================="
 echo "Printing MedPerf version"
@@ -195,7 +194,7 @@ echo "Running data submission step"
 echo "====================================="
 print_eval "medperf dataset submit -p $PREP_UID -d $DIRECTORY/dataset_a -l $DIRECTORY/dataset_a --name='dataset_a' --description='mock dataset a' --location='mock location a' -y"
 checkFailed "Data submission step failed"
-DSET_A_UID=$(medperf dataset ls | grep dataset_a | tr -s ' ' | cut -d ' ' -f 1)
+DSET_A_UID=$(medperf dataset ls | grep dataset_a | tr -s ' ' | awk '{$1=$1;print}' | cut -d ' ' -f 1)
 echo "DSET_A_UID=$DSET_A_UID"
 ##########################################################