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48 Open 13 Closed
48 Open 13 Closed
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Issues list

MIMIC-IV tutorial: move steps from tabularize_meds.sh to README.md
#104 opened Dec 20, 2024 by prockenschaub
M1 and M2 support on mac
#102 opened Dec 5, 2024 by Simonlee711
Support Loading Tabularized Features for Statistical Analysis
#101 opened Nov 14, 2024 by Oufattole
@teyaberg
Add error message for invalid label schema
#95 opened Oct 21, 2024 by Oufattole
Relax polars dependency to prevent conflicts with other (MEDS) packages
#94 opened Sep 19, 2024 by rvandewater
model_file_stem not resolving for sklearn models priority:low
#93 opened Sep 10, 2024 by teyaberg
Clear input/output documentation can help with debugging documentation Improvements or additions to documentation priority:high
#88 opened Aug 31, 2024 by rvandewater
We should distribute python typing information priority:low
#87 opened Aug 30, 2024 by mmcdermott
1
We should make our config names more package specific
#86 opened Aug 29, 2024 by mmcdermott
1
If describe_codes sees no input files, it should throw an error. bug Something isn't working
#85 opened Aug 26, 2024 by mmcdermott
1
Move tabularization to YAML configuration
#84 opened Aug 26, 2024 by coderabbitai bot
@mmcdermott
1
Log file path for tabularization may not be specific enough.
#83 opened Aug 20, 2024 by mmcdermott
Log file path is not being interpolated correctly.
#82 opened Aug 20, 2024 by mmcdermott
Error messaging and handling is poor for when no "static/first" codes exist in the dataset
#77 opened Aug 11, 2024 by mmcdermott
2
Why are we restricting just to the first static code per patient? Shouldn't we want to summarize all static codes? bug Something isn't working question Further information is requested
#76 opened Aug 11, 2024 by mmcdermott
3
This package should integrate more closely with MEDS-Transform
#75 opened Aug 11, 2024 by mmcdermott
This is not a good default for this parameter. It should default to ???
#73 opened Aug 11, 2024 by mmcdermott
The two test files existent as of when this issue is filed (link below) seem at least partially redundant with one another.
#70 opened Aug 11, 2024 by mmcdermott
Tests are too sparse and too dependent on integration tests.
#69 opened Aug 11, 2024 by mmcdermott
The need to re-shard labels as well should be removed if possible.
#68 opened Aug 11, 2024 by mmcdermott
The dependence on the MEDS_polars sharding style split / shard_num is brittle and should be removed where possible.
#67 opened Aug 11, 2024 by mmcdermott
If the xgboost script crashes when run on the command line, it should return a non-zero error code
#60 opened Aug 10, 2024 by mmcdermott
We need to update this to support MEDS v0.3
#55 opened Aug 10, 2024 by mmcdermott
8 of 10 tasks
@mmcdermott
1
We may need to support working with MEDS datasets that have "code modifier" columns
#54 opened Jul 30, 2024 by mmcdermott
Add wrapper code to ease loading model and corresponding aggregations into a jupyter notebook or user defined script
#53 opened Jul 17, 2024 by Oufattole
@Oufattole @teyaberg
ProTip! Updated in the last three days: updated:>2024-12-18.