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[MRG] Add tiny BIDS test dataset, fix doctests, and run it in CI #831

Merged
merged 27 commits into from
Jul 14, 2021
Merged

[MRG] Add tiny BIDS test dataset, fix doctests, and run it in CI #831

merged 27 commits into from
Jul 14, 2021

Commits on Jul 6, 2021

  1. fix doctests in path.py

    @sappelhoff
    sappelhoff committed Jul 6, 2021
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  2. test: use pytest --doctest-modules

    @sappelhoff
    sappelhoff committed Jul 6, 2021
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  3. Merge branch 'main' into fix/doctests

    @sappelhoff
    sappelhoff committed Jul 6, 2021
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Commits on Jul 7, 2021

  1. fix some more examples

    @sappelhoff
    sappelhoff committed Jul 7, 2021
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Commits on Jul 13, 2021

  1. Merge branch 'main' into fix/doctests

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  2. make use of _write_json instead of json.dump

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  3. fix fine-calib and crosstalk doctest

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  4. DATA: add tiny_bids test dataset ~800kb

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  5. fix all doctests using new test ds

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  6. add code for generating tiny_bids

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  7. fix example, sphinx warning

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  8. use tiny_bids in bidspath example, fix mne-tools#829

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  9. write TSV files with newline character

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  10. add missing newlines at end of files

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  11. do not run pytest on examples 

    we did not do that before either, but --doctest-modules is now ON

and that option apparently also runs the examples
    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  12. add whatsnew for TSV line end

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  13. properly ignore examples in pytest

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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  14. fix head_to_mri upstream API change

    @sappelhoff
    sappelhoff committed Jul 13, 2021
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Commits on Jul 14, 2021

  1. merge master

    @sappelhoff
    sappelhoff committed Jul 14, 2021
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  2. xfail doctest on windows due to / vs \

    @sappelhoff
    sappelhoff committed Jul 14, 2021
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  3. BIDSPath __str__ always .as_posix()

    @sappelhoff
    sappelhoff committed Jul 14, 2021
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  4. fix op.join -> Path

    @sappelhoff
    sappelhoff committed Jul 14, 2021
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  5. root in __repr__ --> posix path or None

    @sappelhoff
    sappelhoff committed Jul 14, 2021
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  6. circumvent bids_path.root __str__

    @sappelhoff
    sappelhoff committed Jul 14, 2021
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  7. 1) fix pep, 2) fix type hints, 3) fix example ds

    @sappelhoff
    sappelhoff committed Jul 14, 2021
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  8. fix type hint

    @sappelhoff
    sappelhoff committed Jul 14, 2021
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  9. I should run make pep before pushing

    @sappelhoff
    sappelhoff committed Jul 14, 2021
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