Phase-slope index using spectral_connectivity_time instead of spectral_connectivity_epochs #729
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name: 'linux / conda' | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
cancel-in-progress: true | |
on: | |
push: | |
branches: | |
- '*' | |
pull_request: | |
branches: | |
- '*' | |
jobs: | |
# Linux | |
job: | |
timeout-minutes: 90 | |
name: 'py3.9' | |
runs-on: ubuntu-20.04 | |
defaults: | |
run: | |
shell: bash -el {0} | |
env: | |
CONDA_ENV: 'environment.yml' | |
DISPLAY: ':99.0' | |
MNE_LOGGING_LEVEL: 'warning' | |
MKL_NUM_THREADS: '1' | |
PYTHONUNBUFFERED: '1' | |
PYTHON_VERSION: '3.9' | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: pyvista/setup-headless-display-action@main | |
with: | |
qt: true | |
pyvista: false | |
- uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: ${{ env.CONDA_ENV }} | |
create-args: >- # beware the >- instead of |, we don't split on newlines but on spaces | |
python=${{ env.PYTHON_VERSION }} | |
- run: | | |
curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/get_minimal_commands.sh -o get_minimal_commands.sh | |
chmod +x get_minimal_commands.sh | |
source ./get_minimal_commands.sh | |
pip install .[test] | |
name: 'Install dependencies' | |
- run: pip install git+https://github.com/mne-tools/mne-python@main | |
- run: pip install -e . | |
- run: | | |
which mne | |
mne sys_info -pd | |
python -c "import numpy; numpy.show_config()" | |
name: 'Show infos' | |
- name: Run pytest | |
run: python -m pytest . --cov=mne_connectivity --cov-report=xml --cov-config=pyproject.toml --verbose --ignore mne-python | |
- uses: codecov/codecov-action@v4 |