[ENH] Add support for ragged connections with multivariate methods with padding #299
Workflow file for this run
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| name: 'linux / conda' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
| cancel-in-progress: true | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - '*' | |
| jobs: | |
| # Linux | |
| job: | |
| timeout-minutes: 90 | |
| name: 'py3.9' | |
| runs-on: ubuntu-20.04 | |
| defaults: | |
| run: | |
| shell: bash | |
| env: | |
| CONDA_ENV: 'environment.yml' | |
| DISPLAY: ':99.0' | |
| MNE_LOGGING_LEVEL: 'warning' | |
| MKL_NUM_THREADS: '1' | |
| PYTHONUNBUFFERED: '1' | |
| PYTHON_VERSION: '3.9' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - run: | | |
| curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/setup_xvfb.sh -o setup_xvfb.sh | |
| chmod +x setup_xvfb.sh | |
| ./setup_xvfb.sh | |
| name: 'Setup xvfb' | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: 'mne' | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| environment-file: ${{ env.CONDA_ENV }} | |
| name: 'Setup conda' | |
| - shell: bash -el {0} | |
| run: | | |
| conda activate mne | |
| curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/get_minimal_commands.sh -o get_minimal_commands.sh | |
| chmod +x get_minimal_commands.sh | |
| source ./get_minimal_commands.sh | |
| pip install -r requirements_testing.txt | |
| name: 'Install dependencies' | |
| - shell: bash -el {0} | |
| name: Install MNE (main) | |
| run: | | |
| git clone --depth 1 https://github.com/mne-tools/mne-python.git -b main | |
| pip install -e ./mne-python | |
| - shell: bash -el {0} | |
| run: | | |
| python setup.py build | |
| python setup.py install | |
| name: 'Install MNE' | |
| - shell: bash -el {0} | |
| run: | | |
| which mne | |
| mne sys_info -pd | |
| python -c "import numpy; numpy.show_config()" | |
| name: 'Show infos' | |
| - name: Run pytest | |
| run: | | |
| python -m pytest . --cov=mne_connectivity --cov-report=xml --cov-config=setup.cfg --verbose --ignore mne-python | |
| shell: bash -el {0} |