[MAINT] Fix failing unit tests & update CI packages #705
Workflow file for this run
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| name: 'unit_tests' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.type }} | |
| cancel-in-progress: true | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| branches: | |
| - '*' | |
| jobs: | |
| # Run style tests | |
| style: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| python-version: [ 3.9 ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install pip | |
| run: | | |
| pip install --upgrade pip setuptools wheel | |
| pip install --upgrade --upgrade-strategy eager -r requirements.txt | |
| pip install --upgrade --upgrade-strategy eager -r requirements_testing.txt | |
| - name: Run style & documentation tests | |
| run: make pep | |
| # Run installation tests | |
| install: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| python-version: [ "3.11" ] | |
| include: | |
| # An old one | |
| - os: ubuntu-latest | |
| python-version: "3.8" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: pyvista/setup-headless-display-action@main | |
| with: | |
| qt: true | |
| pyvista: false | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip setuptools wheel | |
| pip install --upgrade --upgrade-strategy eager -r requirements.txt | |
| pip install --upgrade --upgrade-strategy eager -r requirements_testing.txt | |
| - run: mne sys_info | |
| - name: Build sdist | |
| run: python setup.py sdist | |
| - name: Install sdist | |
| run: pip install ./dist/mne-connectivity-* | |
| shell: bash -e {0} | |
| - name: Clean up working directory | |
| run: rm -rf ./* | |
| shell: bash -e {0} | |
| - name: Try importing mne_connectivity | |
| run: python -c 'import mne_connectivity; print(mne_connectivity.__version__)' | |
| - name: Remove sdist install | |
| run: pip uninstall -y mne-connectivity | |
| # build with build wheet | |
| - uses: actions/checkout@v4 | |
| - name: Build wheel | |
| run: python setup.py bdist_wheel | |
| - name: Install wheel | |
| run: pip install ./dist/mne_connectivity-*.whl | |
| shell: bash -e {0} | |
| - name: Clean up working directory | |
| run: rm -rf ./* | |
| shell: bash -e {0} | |
| - name: Try importing mne_connectivity | |
| run: python -c 'import mne_connectivity; print(mne_connectivity.__version__)' | |
| - name: Remove wheel install | |
| run: pip uninstall -y mne-connectivity | |
| - uses: actions/checkout@v4 | |
| - name: Test extras install | |
| run: | | |
| pip install .[full] | |
| python -c 'import mne_connectivity; print(mne_connectivity.__version__)' | |
| # Run unit tests | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -e {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python-version: "3.8" | |
| mne-version: mne-main | |
| - os: ubuntu-latest | |
| python-version: "3.11" | |
| mne-version: mne-main | |
| - os: macos-latest | |
| python-version: "3.11" | |
| mne-version: mne-main | |
| - os: windows-latest | |
| python-version: "3.11" | |
| mne-version: mne-main | |
| env: | |
| TZ: Europe/Berlin | |
| FORCE_COLOR: true | |
| DISPLAY: ':99.0' | |
| MNE_LOGGING_LEVEL: 'info' | |
| OPENBLAS_NUM_THREADS: '1' | |
| PYTHONUNBUFFERED: '1' | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v4 | |
| - uses: pyvista/setup-headless-display-action@main | |
| with: | |
| qt: true | |
| pyvista: false | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip setuptools wheel | |
| pip install --upgrade --upgrade-strategy eager -r requirements.txt -r requirements_testing.txt | |
| - if: matrix.mne-version == 'mne-stable' | |
| run: pip install --upgrade mne | |
| - name: Install MNE (main) | |
| if: matrix.mne-version == 'mne-main' | |
| run: pip install git+https://github.com/mne-tools/mne-python@main | |
| - run: python -c "import mne; print(mne.datasets.testing.data_path(verbose=True))" | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' | |
| - name: Display versions and environment information | |
| run: | | |
| echo $TZ | |
| date | |
| python --version | |
| which python | |
| - run: pip install -e . | |
| - run: mne sys_info | |
| - run: python -m pytest . --cov=mne_connectivity --cov-report=xml --cov-config=setup.cfg --verbose --ignore mne-python | |
| - uses: codecov/codecov-action@v3 |