'Multiple matching projects' error when explicitly stating project

[andyb3]

Still get error for multiple matching projects when explicitly specifying project using -p flag.

In DNAnexus there are the following 3 projects:
003_181221_M02631_0140_000000000-C7LBK
003_181221_M02631_0140_000000000-C7LBK_partial
003_181221_M02631_0140_000000000-C7LBK_partial2

When running script with following command (with project specified using --project flag)

backup_runfolder.py -i /media/data1/share/181221_M02631_0140_000000000-C7LBK --logpath /home/mokaguys/Documents/automate_demultiplexing_logfiles/backup_runfolder_logfiles --project 003_181221_M02631_0140_000000000-C7LBK

Get:

2019-01-02 12:28:33,259 backup_runfolder.UAcaller 
ERROR - 3 matching DNAnexus projects were found for pattern: (003_181221_M02631_0140_000000000-C7LBK). Repeat script by giving explicit project to -p/--project flag```

[andyb3]

workstation_housekeeping/backup_runfolder.py

Lines 174 to 176 in 3f60794

	else:
	# Else, search for the exact project name passed to the function
	pattern = r'({})'.format(project)

Think this is because the regex doesn't define start and end of pattern, so anything containing the pattern still matches. i.e. change r'({})'.format(project) to r'^({})$'.format(project)

[andyb3]

actually on further inspection the above wouldn't work because the returned data from dx find projects is in format:

project-FGyzJQ00fZY17Z6XF9BGVqk8 : 003_180702_M02353_0228_000000000-G28HK_ONCO (ADMINISTER)

so would probably need to do something like r'project-.* : ({}) \([A-Z]+\)'.format(project)

[aledj2]

bump