4.2.0

New

• includes the new nf_ngs_dna WGS pipeline (nextflow)
  • new script startNextflowDragenPipeline.sh
• new script that (re)moves the sequencing data from the sequencers_incoming to the sequencers folder
  • data will be removed 2 days after .transferCompleted file is created
• added build column in the samplesheet when not present (in moveAndCheckSamplesheet)

Edits

• genomescan will now write UMCG_CSV samplesheet in the root of the batch (instead of in the Raw_data folder)
• tar gzipped jobs file is now without complete data structure, only contains "basename"

Bugfixes

• when the piped head is finished faster than the entire reading of the file (which leads to an error), using tail now instead
• when Genomescan uses sequencers with longer names
• when demultiplexing-only a finished state was never reached. (removed wrongly continue command)