NGS_RNA-4.1.2

What's Changed

• Relocated tmp by @Gerbenvandervries in #59
• remove trimmed reads to prevent copying to prm by @Gerbenvandervries in #61

Full Changelog: 4.1.1...4.1.2

NGS_RNA-4.1.1

bugfix new filestructure for bucketsystem

NGS_RNA-4.1.0

Merge pull request #44 from pneerincx/improved_indentationcheck

Improved indentation check.

NGS_RNA-4.0.1

Bugfix release

NGS_RNA-4.0.0

Update to latest version for all tools with GATK4 style variant calling.

added tools:

• Leafcutter
• Deseq2
• TrimGalore
• cutadapt
• RSeQC

NGS_RNA-3.3.0

Merge pull request #13 from Gerbenvandervries/master

Trace and trace additions

NGS_RNA-3.2.5

• multiqc report
• trimming

NGS_RNA-3.2.4 (Gibbon)

Merge pull request #4 from Gerbenvandervries/master

added boxy parameter, fix for environment check

NGS_RNA-3.2.3 (Frog)

• update to Molgenis Compute Molgenis-Compute-v16.05.1, with preperations for automatic start of pipelines
• Added more documetation
• The following bugfixes:

*MergeBam step contains symlink with absolute path
*There is no insertsize metrics when SR
*Kallisto is not working, missing index file
*Add strandedness-option: yes | no | reverse for HT-seq count