Merge pull request #180 from RoanKanninga/master

cleaning up
molgenis · Nov 3, 2017 · 0fd68fb · 0fd68fb
2 parents d89ae0f + 03e59cb
commit 0fd68fb
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diff --git a/...on_sequences_filtered_headered_sorted.bed → NIPT/test.tar.gz b/...on_sequences_filtered_headered_sorted.bed → NIPT/test.tar.gz
diff --git a/NIPT/test/ChiCorrection/TestChiCorrection.sh b/NIPT/test/ChiCorrection/TestChiCorrection.sh
diff --git a/NIPT/test/ChiCorrection/TestChiCorrection_forward.sh b/NIPT/test/ChiCorrection/TestChiCorrection_forward.sh
diff --git a/...rection/bestControlSet/merged_NIT20140001_F3_20140206_u0mm_subopt.BestControlSet.list.tsv b/...rection/bestControlSet/merged_NIT20140001_F3_20140206_u0mm_subopt.BestControlSet.list.tsv
diff --git a/...on/tmp/merged_NIT20140001_F3_20140206_u0mm_subopt.forward.controlfiles.corrected.bins.rds b/...on/tmp/merged_NIT20140001_F3_20140206_u0mm_subopt.forward.controlfiles.corrected.bins.rds
diff --git a/...orrection/tmp/merged_NIT20140001_F3_20140206_u0mm_subopt.forward.corrected.bins.table.tsv b/...orrection/tmp/merged_NIT20140001_F3_20140206_u0mm_subopt.forward.corrected.bins.table.tsv
diff --git a/...on/tmp/merged_NIT20140001_F3_20140206_u0mm_subopt.reverse.controlfiles.corrected.bins.rds b/...on/tmp/merged_NIT20140001_F3_20140206_u0mm_subopt.reverse.controlfiles.corrected.bins.rds
diff --git a/...orrection/tmp/merged_NIT20140001_F3_20140206_u0mm_subopt.reverse.corrected.bins.table.tsv b/...orrection/tmp/merged_NIT20140001_F3_20140206_u0mm_subopt.reverse.corrected.bins.table.tsv
diff --git a/NIPT/test/CreateBins/TestCreateBins.sh b/NIPT/test/CreateBins/TestCreateBins.sh
diff --git a/NIPT/test/CreateBins/TestCreateBins_forward.sh b/NIPT/test/CreateBins/TestCreateBins_forward.sh
diff --git a/NIPT/test/CreateBins/TestCreateBins_reverse.sh b/NIPT/test/CreateBins/TestCreateBins_reverse.sh
diff --git a/NIPT/test/CreateBins/data b/NIPT/test/CreateBins/data
diff --git a/NIPT/test/CreateBins/output/GoldsStandards_bins_forward.csv b/NIPT/test/CreateBins/output/GoldsStandards_bins_forward.csv
diff --git a/NIPT/test/CreateBins/output/GoldsStandards_bins_forward.pdf b/NIPT/test/CreateBins/output/GoldsStandards_bins_forward.pdf
diff --git a/NIPT/test/CreateBins/output/GoldsStandards_bins_reverse.csv b/NIPT/test/CreateBins/output/GoldsStandards_bins_reverse.csv
diff --git a/NIPT/test/CreateBins/output/GoldsStandards_bins_reverse.pdf b/NIPT/test/CreateBins/output/GoldsStandards_bins_reverse.pdf
diff --git a/NIPT/test/DetermineBestControl/DetermineBestControl_will_be_removed_from_pipeline b/NIPT/test/DetermineBestControl/DetermineBestControl_will_be_removed_from_pipeline
diff --git a/NIPT/test/InterChiCorrection/InterChiCorrection_will_be_removed_from_pipeline b/NIPT/test/InterChiCorrection/InterChiCorrection_will_be_removed_from_pipeline
diff --git a/NIPT/test/data/testReads/gold_standard_README.txt b/NIPT/test/data/testReads/gold_standard_README.txt
diff --git a/gene_based_CADD_score_validator/scripts/R/CGD_analysis.r b/gene_based_CADD_score_validator/scripts/R/CGD_analysis.r
diff --git a/gene_based_CADD_score_validator/scripts/java/annotator/CmdLineAnnotator.jar b/gene_based_CADD_score_validator/scripts/java/annotator/CmdLineAnnotator.jar