added printing rejected samples to file

molgenis · Feb 13, 2018 · 1d62328 · 1d62328
1 parent b410689
commit 1d62328
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/countCoverage.sh b/countCoverage.sh
@@ -153,6 +153,7 @@ fi
 for i in "${REJECTEDSAMPLES[@]}"
 do
 	echo "removed ${WORKDIR}/coverage/${i}.coverage"
+	echo "removed ${WORKDIR}/coverage/${i}.coverage" > ${WORKDIR}/rejectedSamples.txt
 	rm ${WORKDIR}/coverage/${i}.coverage
 done