Merge pull request #205 from RoanKanninga/master

Bugfix in checkSamplesheet.
molgenis · Sep 26, 2018 · 5d94fa6 · 5d94fa6
2 parents c1278d6 + 958aa26
commit 5d94fa6
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/checkSamplesheet.py b/checkSamplesheet.py
@@ -60,6 +60,12 @@
 					listOfErrors.append('ERROR on line ' + str(number) + ': Variable ' + columnName + ' is empty! Please fill in "None" (to make sure it is not missing).')
 				else:
 					listOfErrors.append('ERROR on line ' + str(number) + ': Variable ' + columnName + ' is empty!')
+
+	if not sanityCheckOk:
+		print('\n'.join(listOfErrors))
+		w.write('\n'.join(listOfErrors))
+		w.close()
+		sys.exit(1)
 	#
 	# Check if the data inside the file matches the expected filename.
 	#