Merge pull request #151 from RoanKanninga/master

update for unknown barcode
molgenis · Dec 9, 2016 · cf54f14 · cf54f14
2 parents 9b99b1c + ea1072a
commit cf54f14
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/CreateIlluminaSampleSheet_V2.pl b/CreateIlluminaSampleSheet_V2.pl
@@ -283,9 +283,10 @@ sub _ProcessExperiment {
 	# Check if barcodeType is one for which we know how to handle it. 
 	#
 	unless (exists($gaf_barcode_types{$barcodeType})) {
-		$logger->fatal('Detected unknown barcodeType ' . $barcodeType . ' for internalSampleID ' . $internalSampleID . '.');
-		$logger->fatal('Known barcodeType values are ' . join(' || ', keys(%gaf_barcode_types)) . '.');
-		exit(1);
+		$gaf_barcode_types{$barcodeType}{'IlluminaDemultiplexing'}=1;
+		#$logger->fatal('Detected unknown barcodeType ' . $barcodeType . ' for internalSampleID ' . $internalSampleID . '.');
+		#$logger->fatal('Known barcodeType values are ' . join(' || ', keys(%gaf_barcode_types)) . '.');
+		#exit(1);
 	}
 
 	my @lanes = split(',',$lanes); # Separate multiple lane values like "1,2".