Fix: gvcf workflow results might be invalid for multi-sample projects (…

…#465)
molgenis · Sep 14, 2023 · 0ea5423 · 0ea5423
1 parent 7c660a1
commit 0ea5423
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Showing 3 changed files with 2 additions and 45 deletions.
diff --git a/config/nxf.config b/config/nxf.config
@@ -1,5 +1,5 @@
 env {
-  VIP_VERSION = "6.0.0"
+  VIP_VERSION = "6.0.1"
 
   TMPDIR = "\${TMPDIR:-\${NXF_TEMP:-\$(mktemp -d)}}"
   APPTAINER_BIND = "${APPTAINER_BIND}"

diff --git a/modules/gvcf/utils.nf b/modules/gvcf/utils.nf
diff --git a/vip_gvcf.nf b/vip_gvcf.nf
@@ -3,7 +3,7 @@ nextflow.enable.dsl=2
 include { parseCommonSampleSheet; getAssemblies } from './modules/sample_sheet'
 include { getCramRegex; getGenomeVcfRegex } from './modules/utils'
 include { validate } from './modules/gvcf/validate'
-include { scatter } from './modules/gvcf/utils'
+include { scatter } from './modules/utils'
 include { merge } from './modules/gvcf/merge'
 include { vcf; validateVcfParams } from './vip_vcf'