Bump/version thresholds (#521)

* update test thresholds * bump version
molgenis · Nov 10, 2023 · 5e5ed0c · 5e5ed0c
1 parent 783690f
commit 5e5ed0c
Show file tree

Hide file tree

Showing 5 changed files with 5 additions and 5 deletions.
diff --git a/config/nxf.config b/config/nxf.config
@@ -1,5 +1,5 @@
 env {
-  VIP_VERSION = "6.2.0"
+  VIP_VERSION = "6.3.0"
 
   TMPDIR = "\${TMPDIR:-\${NXF_TEMP:-\$(mktemp -d)}}"
   APPTAINER_BIND = "${APPTAINER_BIND}"

diff --git a/test/suites/vcf/lb.sh b/test/suites/vcf/lb.sh
@@ -11,7 +11,7 @@ args+=("--resume")
 vip "${args[@]}" 1> /dev/null
 
 # compare expected to actual output and store result
-if [ ! "$(zcat "${OUTPUT_DIR}/vip.vcf.gz" | grep -vc "^#")" -gt 144 ]; then
+if [ ! "$(zcat "${OUTPUT_DIR}/vip.vcf.gz" | grep -vc "^#")" -gt 142 ]; then
   result="0"
 else
   result="1"

diff --git a/test/suites/vcf/lb_b38.sh b/test/suites/vcf/lb_b38.sh
@@ -11,7 +11,7 @@ args+=("--resume")
 vip "${args[@]}" 1> /dev/null
 
 # compare expected to actual output and store result
-if [ ! "$(zcat "${OUTPUT_DIR}/vip.vcf.gz" | grep -vc "^#")" -gt 151 ]; then
+if [ ! "$(zcat "${OUTPUT_DIR}/vip.vcf.gz" | grep -vc "^#")" -gt 148 ]; then
   result="0"
 else
   result="1"

diff --git a/test/suites/vcf/lp.sh b/test/suites/vcf/lp.sh
@@ -11,7 +11,7 @@ args+=("--resume")
 vip "${args[@]}" 1> /dev/null
 
 # compare expected to actual output and store result
-if [ ! "$(zcat "${OUTPUT_DIR}/vip.vcf.gz" | grep -vc "^#")" -lt 2301 ]; then
+if [ ! "$(zcat "${OUTPUT_DIR}/vip.vcf.gz" | grep -vc "^#")" -lt 2302 ]; then
   result="0"
 else
   result="1"

diff --git a/test/suites/vcf/lp_b38.sh b/test/suites/vcf/lp_b38.sh
@@ -11,7 +11,7 @@ args+=("--resume")
 vip "${args[@]}" 1> /dev/null
 
 # compare expected to actual output and store result
-if [ ! "$(zcat "${OUTPUT_DIR}/vip.vcf.gz" | grep -vc "^#")" -lt 2302 ]; then
+if [ ! "$(zcat "${OUTPUT_DIR}/vip.vcf.gz" | grep -vc "^#")" -lt 2304 ]; then
   result="0"
 else
   result="1"