Fix install.sh: download unzipped ref index files (#485)

* Fix install.sh: download unzipped ref index files * bump version v6.1.0 to v6.1.1
molgenis · Oct 7, 2023 · b6dbb25 · b6dbb25
1 parent 4c0197b
commit b6dbb25
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/config/nxf.config b/config/nxf.config
@@ -1,5 +1,5 @@
 env {
-  VIP_VERSION = "6.1.0"
+  VIP_VERSION = "6.1.1"
 
   TMPDIR = "\${TMPDIR:-\${NXF_TEMP:-\$(mktemp -d)}}"
   APPTAINER_BIND = "${APPTAINER_BIND}"

diff --git a/install.sh b/install.sh
@@ -64,6 +64,7 @@ download_resources_molgenis() {
     files+=("GRCh37/hg19.100way.phyloP100way.bed.gz")
     files+=("GRCh37/hg19.100way.phyloP100way.bed.gz.tbi")
     files+=("GRCh37/human_g1k_v37.dict")
+    files+=("GRCh37/human_g1k_v37.fasta.fai")
     files+=("GRCh37/human_g1k_v37.fasta.gz")
     files+=("GRCh37/human_g1k_v37.fasta.gz.fai")
     files+=("GRCh37/human_g1k_v37.fasta.gz.gzi")
@@ -87,6 +88,7 @@ download_resources_molgenis() {
     files+=("GRCh38/expansionhunter_variant_catalog.json")
     files+=("GRCh38/variant_catalog_grch38_fixed.json")
     files+=("GRCh38/GCA_000001405.15_GRCh38_no_alt_analysis_set.dict")
+    files+=("GRCh38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.fai")
     files+=("GRCh38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz")
     files+=("GRCh38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.fai")
     files+=("GRCh38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.gzi")