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GFDL to main (2024-11-27)#1647

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marshallward wants to merge 131 commits intomom-ocean:mainmom-ocean/MOM6:mainfrom NOAA-GFDL:gfdl-to-main-2024-11-27NOAA-GFDL/MOM6:gfdl-to-main-2024-11-27Copy head branch name to clipboard

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Commits

Commits on Jun 2, 2024

• Spatially variable fields for MLE%Bodner (#617)

  Show description for 70bfe8f
  kshedstrom

  authored
  70bfe8f

• Flux through static ice-shelf to icebergs/new diagnostics (#622)

  Show description for b610226
  alex-huth

  authored
  b610226

Commits on Jun 3, 2024

• +(*)Refactor Idealize_Hurricane

  Show description for d8e714e
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  d8e714e

• Add rescaling parameter to kappa shear (#643)

  Show description for 9059671
  

  5 peopleauthored
  9059671

• Prestore axes_data in set_up_ALE_sponge_field

  Show description for f0badc6
  

  yichengt900

  authored and

  marshallward

  committed
  f0badc6

• +Add ROBUST_STOKES_PGF and LA_MISALIGNMENT_BUG

  Show description for 08a6106
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  08a6106

• Ice-shelf dynamics updates

  Show description for e58b95f
  

  alex-huth

  authored and

  marshallward

  committed
  e58b95f

Commits on Jun 4, 2024

• Add units to the descriptions of 79 variables

  Show description for 7ccea2a
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  7ccea2a

• +(*)Fix sign of neutral_slope_x diag with no EOS

  Show description for b389a89
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  b389a89

Commits on Jun 5, 2024

• +Add DETERMINE_TEMP_CONVERGENCE_BUG parameter

  Show description for d6500bc
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  d6500bc

• (*)Fix Kd_interface diag in newer diabatic_ALE

  Show description for 9ab5f34
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  9ab5f34

• +(*)Fix rotation of coupler_type variables

  Show description for 270ba59
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  270ba59

Commits on Jun 6, 2024

• Deallocate eta_av_bc in MOM_end()

  

  herrwang0

  authored and

  marshallward

  committed
  b56a640

• Fix warning message indices in MOM_barotropic

  Show description for 8521222
  

  herrwang0

  authored and

  marshallward

  committed
  8521222

• Normalize wt_[uv] in MOM_barotropic

  Show description for a296080
  

  herrwang0

  authored and

  marshallward

  committed
  a296080

• Use dt for vertvisc_remnant() in predictor

  Show description for 66e8891
  

  herrwang0

  authored and

  marshallward

  committed
  66e8891

• Fix a typo in USE_CONT_THICKNESS description

  

  herrwang0

  authored and

  marshallward

  committed
  337ee73

• Remove visc_rem from h_[uv] in continuity solver

  Show description for 1d2911f
  

  herrwang0

  authored and

  marshallward

  committed
  1d2911f

• Use Adcroft_reciprocal for Iwt_[uv]_tot

  Show description for 09774d4
  

  herrwang0

  authored and

  marshallward

  committed
  09774d4

Commits on Jun 7, 2024

• Refactor PressureForce_FV before ice shelf fixes

  Show description for 215b960
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  215b960

Commits on Jun 18, 2024

• (*)Avoid diagnostic seg fault in a 10km deep ocean

  Show description for 31afce0
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  31afce0

• +Add BACKSCATTER_UNDERBOUND

  Show description for 36dda7e
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  36dda7e

Commits on Jun 20, 2024

• Correct the computation of FrictWork in MOM_hor_visc

  Show description for f798796
  Wendazhang33

  authored
  f798796

Commits on Jun 21, 2024

• CI: parse_perf.py bugfix

  Show description for 9351353
  marshallward

  committed
  9351353

Commits on Jul 3, 2024

• Cleaned up MOM_remapping to reduce compiler warnings

  Show description for 10f4312
  

  adcroft

  authored and

  marshallward

  committed
  10f4312

• Add timings_tests/time_MOM_remapping

  Show description for b4e3c64
  

  adcroft

  authored and

  marshallward

  committed
  b4e3c64

• Added drivers/unit_tests/test_MOM_remapping.F90

  Show description for a8105af
  

  adcroft

  authored and

  marshallward

  committed
  a8105af

• Re-factored remapping_unit_tests()

  Show description for 622651b
  

  adcroft

  authored and

  marshallward

  committed
  622651b

• Refactor/split remap_via_sub_cells() adding intersect_src_tgt_grids()

  Show description for b262955
  

  adcroft

  authored and

  marshallward

  committed
  b262955

• Refactor/split remap_via_sub_cells() adding remap_src_to_sub_grid()

  Show description for 11c50db
  

  adcroft

  authored and

  marshallward

  committed
  11c50db

• Removed debugging from remap_via_sub_cells() in MOM_remapping.F90

  Show description for 99363e4
  

  adcroft

  authored and

  marshallward

  committed
  99363e4

• Last refactor of remap_via_sub_cells() adding remap_sub_to_tgt_grid()

  Show description for 40e6d6d
  

  adcroft

  authored and

  marshallward

  committed
  40e6d6d

• Fix remapping of last layer for mismatched ocean depths

  Show description for 88d9eb7
  

  adcroft

  authored and

  marshallward

  committed
  88d9eb7

Commits on Jul 4, 2024

• Replace kind=8 with iso_fortran_env kinds

  Show description for 7cea6dd
  marshallward

  committed
  7cea6dd

Commits on Jul 8, 2024

• +(*)Fix problems with generic_tracer_min_max

  Show description for f596c81
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  f596c81

Commits on Jul 9, 2024

• Autoconf: Disable LDFLAGS for C testing (#674)

  Show description for ac9d6a4
  marshallward

  authored
  ac9d6a4

• (*)Fix bug in rotate_ALE_sponge for fixed sponges

  Show description for 659d19b
  Hallberg-NOAA

  committed
  659d19b

• +Renamed myStats scale argument to unscale

  Show description for f8f127c
  Hallberg-NOAA

  committed
  f8f127c

Commits on Jul 10, 2024

• +Add a better variant of add_LOTW_BBL_diffusivity

  Show description for c4a72df
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  c4a72df

• +Add optional unscale arguments to checksums

  Show description for e9f59c2
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  e9f59c2

• +Add optional unscale arguments to MOM_write_field

  Show description for 2f2b790
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  2f2b790

Commits on Jul 13, 2024

• Better error messages in interp_for_nondim_pos

  Show description for c5e5e30
  Hallberg-NOAA

  committed
  c5e5e30

• Correct 10 do-loop index cases

  Show description for b4c91e3
  Hallberg-NOAA

  committed
  b4c91e3

• Use unscale arguments in 384 checksum calls

  Show description for 12af900
  Hallberg-NOAA

  committed
  12af900

Commits on Jul 15, 2024

• +Add and use query_debugging_checks

  Show description for 2c1a9d3
  Hallberg-NOAA

  committed
  2c1a9d3

Commits on Jul 24, 2024

• Inline harmonic analysis

  Show description for 85c72b8
  

  c2xu

  authored and

  Hallberg-NOAA

  committed
  85c72b8

• Inline harmonic analysis

  Show description for caae653
  

  c2xu

  authored and

  Hallberg-NOAA

  committed
  caae653

Commits on Jul 26, 2024

• Perform unit conversion for internal heat only when it is applicable

  

  yichengt900

  authored and

  adcroft

  committed
  0440ed4

• Adding Bodner reference

  

  kshedstrom

  authored and

  adcroft

  committed
  a8d43f7

• Failing attempt to link to mle docs.

  

  kshedstrom

  authored and

  adcroft

  committed
  d76926c

• Two more references

  

  kshedstrom

  authored and

  adcroft

  committed
  780d931

• Working on documentation links

  

  kshedstrom

  authored and

  adcroft

  committed
  ec40a7c

• Added Young reference

  

  kshedstrom

  authored and

  adcroft

  committed
  0e17b73

• Fix line length in comment

  

  kshedstrom

  authored and

  adcroft

  committed
  369d716

• Delete duplicate entry

  

  kshedstrom

  authored and

  adcroft

  committed
  86b4c85

• Another duplicate bib entry

  

  kshedstrom

  authored and

  adcroft

  committed
  fb40a4a

• Another duplicate ref

  

  kshedstrom

  authored and

  adcroft

  committed
  4fa86fd

• Clean out another duplicate ref.

  

  kshedstrom

  authored and

  adcroft

  committed
  d93f8bf

• Fix the Accad ref.

  

  kshedstrom

  authored and

  adcroft

  committed
  078ec30

• still cleaning the docs

  

  kshedstrom

  authored and

  adcroft

  committed
  da3ec99

• Fix case

  

  kshedstrom

  authored and

  adcroft

  committed
  b7fee4d

• Cleaning up tides section

  

  kshedstrom

  authored and

  adcroft

  committed
  4f1ecf4

Commits on Jul 27, 2024

• *+Fix non-Boussinesq MASS_WEIGHT_IN_PGF bug

  Show description for 1b39d07
  

  Hallberg-NOAA

  authored and

  adcroft

  committed
  1b39d07

Commits on Jul 30, 2024

• Merge branch 'main' into main-to-gfdl_2024-05-31

  Show description for c3349ab
  adcroft

  committed
  c3349ab

Commits on Jul 31, 2024

• Fix logic for reading parameter in MOM_tracer_advect.F90

  Show description for 90749f3
  adcroft

  committed
  90749f3

Commits on Aug 1, 2024

• Removes remap_via_sub_cells(), after copying code into remapping_core_h()

  Show description for 87a0c61
  

  adcroft

  authored and

  Hallberg-NOAA

  committed
  87a0c61

• Add gustless Tau to fluxes extracted from IOB by FMS cap.

  Show description for 0344a76
  

  breichl

  authored and

  Hallberg-NOAA

  committed
  0344a76

Commits on Aug 2, 2024

• Adds new pre-defined coordinate WOA09INT

  Show description for da59eb0
  

  adcroft

  authored and

  marshallward

  committed
  da59eb0

• Adds new pre-defined coordinate WOA23INT

  Show description for fee3281
  

  adcroft

  authored and

  marshallward

  committed
  fee3281

• Fix bugs in setting GxSpV_u and GxSpV_v in MOM_isopycnal_slopes (#701)

  Show description for e30a6e7
  Wendazhang33

  authored
  e30a6e7

• Add option to use non-surface density in MLD_003

  Show description for 906d96a
  

  Theresa Morrison

  authored and

  Hallberg-NOAA

  committed
  906d96a

• Move MLD Diagnostics out of MOM_diabatic_aux.F90

  Show description for f1ba822
  

  Theresa Morrison

  authored and

  Hallberg-NOAA

  committed
  f1ba822

Commits on Aug 10, 2024

• +Move array_global_min_max to MOM_spatial_means

  Show description for 22c9cbc
  Hallberg-NOAA

  committed
  22c9cbc

• +Add runtime parameter WRITE_TRACER_MIN_MAX

  Show description for 9b45087
  Hallberg-NOAA

  committed
  9b45087

Commits on Aug 20, 2024

• * Fix for spatially varying Bodner fields.

  Show description for a78aa57
  

  kshedstrom

  authored and

  marshallward

  committed
  a78aa57

Commits on Aug 21, 2024

• Fix USE_CONT_THICKNESS bug

  Show description for 42c1a32
  

  awallcraft

  authored and

  marshallward

  committed
  42c1a32

• Directional linear wave drag (#703)

  Show description for 2024f6f
  c2xu

  authored
  2024f6f

• Restore computation of vorticity in MOM_hor_visc.F90

  

  Pperezhogin

  authored and

  marshallward

  committed
  d234bce

Commits on Sep 3, 2024

• Makedep output cleanup and PEP8 fixes

  Show description for a6dd0fd
  marshallward

  committed
  a6dd0fd

Commits on Sep 4, 2024

• Merge branch 'main' into dev/gfdl

  Show description for 1eccd28
  Hallberg-NOAA

  committed
  1eccd28

Commits on Sep 6, 2024

• Inline harmonic analysis

  Show description for 91eee52
  

  c2xu

  authored and

  marshallward

  committed
  91eee52

Commits on Sep 9, 2024

• diffusivities from internal tides ray tracing algo (#677)

  Show description for 2316ae5
  raphaeldussin

  authored
  2316ae5

Commits on Sep 10, 2024

• Streaming filter (#675)

  Show description for 95744a7
  c2xu

  authored
  95744a7

Commits on Sep 11, 2024

• +Optionally use SSH in calculate density for PGF

  Show description for ffff6f3
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  ffff6f3

• (*)Refactor p_ave calculation

  Show description for 9b9c165
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  9b9c165

Commits on Sep 12, 2024

• Rotate ice shelf forcing and initialization

  Show description for 5fc90eb
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  5fc90eb

Commits on Sep 17, 2024

• +Add MASS_WEIGHT_IN_PRESSURE_GRADIENT_TOP

  Show description for 70a48e3
  

  claireyung

  authored and

  marshallward

  committed
  70a48e3

• +Add top mass_weight_in_PGF option to 13 integrals

  Show description for 8520c9f
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  8520c9f

• +Add CORRECTION_INTXPA

  Show description for e172fe8
  

  claireyung

  authored and

  marshallward

  committed
  e172fe8

• +Add CORRECTION_INTXPA_5PT

  Show description for 15ea628
  

  claireyung

  authored and

  marshallward

  committed
  15ea628

• +Add RESET_INTXPA_INTEGRAL

  Show description for 1b9bf67
  

  claireyung

  authored and

  marshallward

  committed
  1b9bf67

• Revisions of sub-ice pressure gradient fixes

  Show description for 7a9545a
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  7a9545a

• *Refactor CORRECTION_INTX_PA

  Show description for 4cf1590
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  4cf1590

• *Non-Boussinesq code for RESET_INTXPA_INTEGRAL

  Show description for 15fd31c
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  15fd31c

• +(*)Add 5-point quadrature in RESET_INTXPA_INTEGRAL

  Show description for 5fceecf
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  5fceecf

• +(*)Eliminate CORRECTION_INTXPA_5PT

  Show description for bdf4b9e
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  bdf4b9e

• *Set MASS_WEIGHT_IN_PRESSURE_GRADIENT in .testing

  Show description for 0363d2b
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  0363d2b

• Dummy code to suppress errors in posix.F90

  Show description for 1830b8e
  marshallward

  committed
  1830b8e

• F2023: Fix argument orders and IO statements

  Show description for e05cc01
  marshallward

  committed
  e05cc01

• Reorder arguments in FMS_cap functions

  Show description for b67e93a
  marshallward

  committed
  b67e93a

• CI: Fortran 2018 testing

  Show description for b2db6bf
  marshallward

  committed
  b2db6bf

Commits on Sep 18, 2024

• Change the default of VISC_REM_CONT_HVEL_FIX

  Show description for b3d7348
  

  herrwang0

  authored and

  marshallward

  committed
  b3d7348

• Separate scalar diagnostics for each ice sheet + parameters to control ice-sheet velocities (#714)

  Show description for ba59078
  alex-huth

  authored
  ba59078

Commits on Sep 26, 2024

• Merge branch 'main' into main-to-gfdl-2024-09-26

  marshallward

  committed
  d3d9fc0

Commits on Sep 27, 2024

• EBT Backscatter (#706)

  Show description for df2cd12
  

  3 peopleauthored
  df2cd12

Commits on Sep 30, 2024

• change CMOR names, fixes #709

  Show description for e24cd3a
  

  Raphael Dussin

  authored and

  marshallward

  committed
  e24cd3a

Commits on Oct 4, 2024

• Fix .testing make for regression tests

  Show description for 5dcc8e0
  

  herrwang0

  authored and

  marshallward

  committed
  5dcc8e0

Commits on Oct 7, 2024

• New diagnostics for flux divergence, strain-rates, deviatorics stresses, and ice speed; and the magnitude of ice surface slope and driving stress. Fixed some misleading units for variables related …

  Show description for cfa8a3d
  

  alex-huth

  authored and

  marshallward

  committed
  cfa8a3d

• Use loops instead of array syntax when calculating ice-shelf diagnostics. Also fixed incorrect loop bounds for a seldom-used ice-shelf convergence criterion

  

  alex-huth

  authored and

  marshallward

  committed
  9d4f9d1

• change default for ice-shelf nonlin_solve_err_mode to 3

  

  alex-huth

  authored and

  marshallward

  committed
  b240e7e

• Ice-shelf FMAs (#729)

  Show description for f90b071
  alex-huth

  authored
  f90b071

Commits on Oct 11, 2024

• Bugfix in MOM_porous_barriers

  Show description for 80d8b5f
  

  herrwang0

  authored and

  marshallward

  committed
  80d8b5f

Commits on Oct 24, 2024

• Update version of checkout action (@v4)

  Show description for 79979a9
  

  adcroft

  authored and

  marshallward

  committed
  79979a9

Commits on Oct 30, 2024

• Switch runner and allow for more run time

  Show description for 795e982
  

  adcroft

  authored and

  marshallward

  committed
  795e982

• +Eliminated h_neglect argument to remapping_core_h

  Show description for e189e05
  

  Hallberg-NOAA

  authored and

  adcroft

  committed
  e189e05

• Change default of USE_POROUS_BARRIER to false

  Show description for 3d37f13
  

  herrwang0

  authored and

  adcroft

  committed
  3d37f13

Commits on Nov 1, 2024

• Set truncation file handle check from < 0 to == -1 (#739)

  Show description for 96a91f5
  marshallward

  authored
  96a91f5

Commits on Nov 5, 2024

• CI: Consolidate unit test rules, codecov pathfix

  Show description for 88ee9dd
  

  marshallward

  authored and

  adcroft

  committed
  88ee9dd

• adding a constant mixing efficiency to internal tides

  

  Raphael Dussin

  authored and

  adcroft

  committed
  a6d27cf

• Revert the change from VISC_REM_CONT_VEL_FIX

  Show description for 76915ff
  

  herrwang0

  authored and

  adcroft

  committed
  76915ff

• Rename VISC_REM bugfix parameters

  Show description for dbb3601
  

  herrwang0

  authored and

  adcroft

  committed
  dbb3601

• Replace hard-coded parameter Rrho0 with runtime parameter Max_Rrho_salt_fingers

  Show description for 13cc946
  

  breichl

  authored and

  adcroft

  committed
  13cc946

Commits on Nov 8, 2024

• Add REMAPPING_SCHEME for OBC, ODA and SPONGE (#751)

  Show description for 31a4d8b
  awallcraft

  authored
  31a4d8b

Commits on Nov 13, 2024

• Add SQG vertical structure to eddy diffusivities (#738)

  Show description for 7a9adbc
  

  Wendazhang33

  and

  adcroft

  authored
  7a9adbc

Commits on Nov 26, 2024

• *+HOR_VISC_ANSWER_DATE logic fix

  Show description for 2b72682
  

  Hallberg-NOAA

  authored and

  marshallward

  committed
  2b72682

Commits on Jan 3, 2025

• MEKE: Split src and src_GM compute loops

  Show description for 59ad6b2
  marshallward

  committed
  59ad6b2

• MEKE: Conditionally compute biharmonic FrCoeff

  Show description for 4a3b4b2
  marshallward

  committed
  4a3b4b2

• MEKE: Move flag test outside of FrictWork loop

  Show description for 0d2d668
  marshallward

  committed
  0d2d668

• MEKE: Move damping diagnostics outside MEKE loop

  Show description for 345a6fb
  marshallward

  committed
  345a6fb

• Diffusivity: Revert int_tide_CS to pointer

  Show description for 910aa38
  marshallward

  committed
  910aa38

• FMA rotation symmetric form of legacy FrictWork_bh

  Show description for c346c73
  marshallward

  committed
  c346c73