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monarch-initiative · Sep 7, 2023 · d7808b4 · d7808b4
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diff --git a/content/images/logmap-scatter-plot-combined.pdf b/content/images/logmap-scatter-plot-combined.pdf
diff --git a/content/images/logmap-scatter-plot-fbbt-wbbt.pdf b/content/images/logmap-scatter-plot-fbbt-wbbt.pdf
diff --git a/content/images/logmap-scatter-plot-fbbt-zfa.pdf b/content/images/logmap-scatter-plot-fbbt-zfa.pdf
diff --git a/content/images/logmap-scatter-plot-hsapdv-mmusdv.pdf b/content/images/logmap-scatter-plot-hsapdv-mmusdv.pdf
diff --git a/content/images/logmap-scatter-plot-mondo-ncit-renal-subset.pdf b/content/images/logmap-scatter-plot-mondo-ncit-renal-subset.pdf
diff --git a/content/vars.json b/content/vars.json
@@ -1,7 +1,7 @@
 {
-  "main_results_hsapdv_mmusdv": " | method     | f1         | P          | R          | \n | ---        | ---        | ---        | ---        | \n | lexmatch   | **0.839**  | 0.929      | **0.765**  | \n | logmap     | 0.643      | 0.818      | 0.529      | \n | gpt3       | 0.522      | **1.000**  | 0.353      | \n | gpt4       | 0.381      | **1.000**  | 0.235      | \n",
-  "main_results_mondo_ncit_renal_subset": " | method     | f1         | P          | R          | \n | ---        | ---        | ---        | ---        | \n | lexmatch   | 0.003      | 0.002      | **1.000**  | \n | logmap     | 0.680      | **0.680**  | 0.680      | \n | gpt3       | 0.679      | 0.643      | 0.720      | \n | gpt4       | **0.759**  | 0.667      | 0.880      | \n",
-  "main_results_combined": " | method     | f1         | P          | R          | \n | ---        | ---        | ---        | ---        | \n | lexmatch   | 0.012      | 0.006      | **0.865**  | \n | logmap     | 0.538      | 0.463      | 0.641      | \n | gpt3       | 0.473      | **0.598**  | 0.391      | \n | gpt4       | **0.647**  | 0.594      | 0.712      | \n",
-  "main_results_fbbt_zfa": " | method     | f1         | P          | R          | \n | ---        | ---        | ---        | ---        | \n | lexmatch   | 0.350      | 0.220      | **0.847**  | \n | logmap     | 0.489      | 0.402      | 0.625      | \n | gpt3       | 0.435      | 0.519      | 0.375      | \n | gpt4       | **0.651**  | **0.560**  | 0.778      | \n",
-  "main_results_fbbt_wbbt": " | method     | f1         | P          | R          | \n | ---        | ---        | ---        | ---        | \n | lexmatch   | 0.264      | 0.156      | **0.857**  | \n | logmap     | 0.589      | 0.528      | 0.667      | \n | gpt3       | 0.345      | **0.625**  | 0.238      | \n | gpt4       | **0.630**  | 0.580      | 0.690      | \n"
+  "main_results_hsapdv_mmusdv": " | method     | f1         | P          | R          | \n | :---       | :---       | :---       | :---       | \n | lexmatch   | 0.606      | 0.455      | **0.909**  | \n | logmap     | 0.531      | 0.405      | 0.773      | \n | gpt3       | 0.556      | 0.714      | 0.455      | \n | gpt4       | **0.647**  | **0.917**  | 0.500      | \n",
+  "main_results_mondo_ncit_renal_subset": " | method     | f1         | P          | R          | \n | :---       | :---       | :---       | :---       | \n | lexmatch   | 0.352      | 0.214      | **1.000**  | \n | logmap     | 0.721      | 0.611      | 0.880      | \n | gpt3       | 0.486      | 0.378      | 0.680      | \n | gpt4       | **0.793**  | **0.697**  | 0.920      | \n",
+  "main_results_combined": " | method     | f1         | P          | R          | \n | :---       | :---       | :---       | :---       | \n | lexmatch   | 0.340      | 0.210      | **0.881**  | \n | logmap     | 0.527      | 0.458      | 0.619      | \n | gpt3       | 0.490      | 0.500      | 0.481      | \n | gpt4       | **0.672**  | **0.601**  | 0.762      | \n",
+  "main_results_fbbt_zfa": " | method     | f1         | P          | R          | \n | :---       | :---       | :---       | :---       | \n | lexmatch   | 0.349      | 0.219      | **0.847**  | \n | logmap     | 0.486      | 0.404      | 0.611      | \n | gpt3       | 0.511      | **0.557**  | 0.472      | \n | gpt4       | **0.644**  | 0.543      | 0.792      | \n",
+  "main_results_fbbt_wbbt": " | method     | f1         | P          | R          | \n | :---       | :---       | :---       | :---       | \n | lexmatch   | 0.257      | 0.152      | **0.854**  | \n | logmap     | 0.520      | 0.441      | 0.634      | \n | gpt3       | 0.427      | 0.471      | 0.390      | \n | gpt4       | **0.660**  | **0.585**  | 0.756      | \n"
 }
diff --git a/data/curated-combined.sssom.tsv b/data/curated-combined.sssom.tsv
diff --git a/data/curated-fbbt-wbbt.sssom.tsv b/data/curated-fbbt-wbbt.sssom.tsv
diff --git a/data/curated-fbbt-zfa.sssom.tsv b/data/curated-fbbt-zfa.sssom.tsv
diff --git a/data/curated-hsapdv-mmusdv.sssom.tsv b/data/curated-hsapdv-mmusdv.sssom.tsv
diff --git a/data/curated-mondo-ncit-renal-subset.sssom.tsv b/data/curated-mondo-ncit-renal-subset.sssom.tsv
diff --git a/data/fbbt.owl b/data/fbbt.owl