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Merge pull request #17 from monarch-initiative/docs-updates
Update docs: (i) docker, (ii) `run.sh`
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# MedGen ingest | ||
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## Prerequisites | ||
On MacOS, (3) and (4) should be available without the need for installation. | ||
On macOS, (2) and (3) should be available without the need for installation. | ||
1. Python 3.9+ | ||
2. `owltools` | ||
3. `make` | ||
4. Perl | ||
2. `make` | ||
3. Perl | ||
4. Docker | ||
5. Docker images | ||
One or both of the following, depending on if you want to run the stable build `latest` or `dev`: | ||
- a. `docker pull obolibrary/odkfull:latest` | ||
- b. `docker pull obolibrary/odkfull:dev` | ||
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## Setup | ||
1. Give permission to run Perl: `chmod +x ./bin/*.pl` | ||
2. Install Python dependencies: `pip install -r requirements.txt` | ||
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## Running the ingest | ||
Run: `make all` | ||
## Running | ||
`sh run.sh make all` |