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Merge pull request #17 from monarch-initiative/docs-updates
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Update docs: (i) docker, (ii) `run.sh`
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joeflack4 authored Mar 2, 2024
2 parents a5d6423 + d042dc8 commit e371eb5
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16 changes: 10 additions & 6 deletions README.md
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# MedGen ingest

## Prerequisites
On MacOS, (3) and (4) should be available without the need for installation.
On macOS, (2) and (3) should be available without the need for installation.
1. Python 3.9+
2. `owltools`
3. `make`
4. Perl
2. `make`
3. Perl
4. Docker
5. Docker images
One or both of the following, depending on if you want to run the stable build `latest` or `dev`:
- a. `docker pull obolibrary/odkfull:latest`
- b. `docker pull obolibrary/odkfull:dev`

## Setup
1. Give permission to run Perl: `chmod +x ./bin/*.pl`
2. Install Python dependencies: `pip install -r requirements.txt`

## Running the ingest
Run: `make all`
## Running
`sh run.sh make all`

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