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37 typeerror in read genes to disease read csv received unexpected keyword argument sep #38

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merged 2 commits into from
Nov 12, 2024
Merged

37 typeerror in read genes to disease read csv received unexpected keyword argument sep #38

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25e89ce
fix `sep` to `separator` for polars
yaseminbridges Nov 12, 2024
4301e6a
bump version
yaseminbridges Nov 12, 2024
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2 changes: 1 addition & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
[tool.poetry]
name = "phenotype2phenopacket"
version = "0.6.1"
version = "0.6.2"
description = ""
authors = ["Yasemin Bridges <[email protected]>"]
readme = "README.md"
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2 changes: 1 addition & 1 deletion src/phenotype2phenopacket/utils/utils.py
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Expand Up @@ -36,7 +36,7 @@ def read_genes_to_disease(genes_to_disease: Path) -> pl.DataFrame:
Returns:
pl.DataFrame: A Polars DataFrame containing the contents of the genes_to_disease.txt.
"""
return pl.read_csv(genes_to_disease, sep="\t")
return pl.read_csv(genes_to_disease, separator="\t")


def load_ontology(local_cached_ontology: Path = None):
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