update documentation

docs/changelog/index.rst

@@ -4,6 +4,8 @@
 Changelog
 =========
 
+* `0.9.0 <2022-01-21>`
+ `-` Change the default color scheme for the inner product score / perturbation score visualization in the in silico gene perturbation module.
 
 * `0.8.5 <2022-01-11>`
  `-` Bug fix on plot saving function in the Network analysis module. The previous version may generate an error when the user try to save plots in network analysis. We fixed the bug.

docs/index.rst

@@ -3,7 +3,7 @@
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
-Welcome to celloracle's documentation!
+Welcome to CellOracle's documentation!
 ======================================
 
 CellOracle is a python library for the in silico gene perturbation analysis using single-cell omics data and gene regulatory network models.
@@ -13,13 +13,6 @@ Source code is available at `CellOracle  GitHub repository <https://github.com/m
 For more information, please read our bioRxiv preprint: `CellOracle: Dissecting cell identity via network inference and in silico gene perturbation <https://www.biorxiv.org/content/10.1101/2020.02.17.947416v3>`_
 
 
-.. note::
-
-   | Documentation is also available as a pdf file.
-
-   :download:`pdf documentation <_build/latex/celloracle.pdf>`
-
-
 .. warning::
    CellOracle is still under development. It is currently a beta version. Functions in this package may change in a future release.
 
@@ -28,6 +21,7 @@ News
 
 Please look `Changelog page <https://morris-lab.github.io/CellOracle.documentation/changelog/index.html>`_ for all updates history of CellOracle package.
 
+- 01/21/2021: We have changed the default color scheme for the inner product / perturbation score visualization in the in silico gene perturbation module. Please look at the tutorial notebook for detail.
 
 - 01/11/2021: We fixed a bug in the network analysis module.