Change v1.1.0 to v1.2.0 #94
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name: CI | |
on: | |
push: | |
branches: [main, develop] | |
paths: ["src/**", "tests/**", ".github/workflows/ci.yml"] | |
pull_request: | |
branches: [main, develop] | |
paths: ["src/**", "tests/**", ".github/workflows/ci.yml"] | |
workflow_dispatch: | |
jobs: | |
CI: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-latest] | |
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
- name: Setup Python ${{ matrix.python-version}} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Rye | |
run: | | |
curl -sSf https://rye-up.com/get | RYE_INSTALL_OPTION="--yes" bash | |
echo "$HOME/.rye/shims" >> $GITHUB_PATH | |
- name: Install python dependencies | |
run: rye sync --update-all --all-features | |
- name: Install external tool dependencies | |
run: | | |
sudo apt update -y | |
sudo apt install -y ncbi-blast+ mmseqs2 mummer progressivemauve | |
if: ${{ matrix.os=='ubuntu-latest' }} | |
- name: Run ruff lint check | |
run: rye run ruff check --diff | |
- name: Run ruff format check | |
run: rye run ruff format --check --diff | |
- name: Run pytest | |
run: rye run pytest |