BCL2BAM2FASTQ is a series of programs to convert from :
-
BCL to BAM
-
BAM to fastq
-
fastq to BAM
Go to https://github.com/grenaud/BCL2BAM2FASTQ and either:
- Download ZIP
or
- Do a "git clone --recursive https://github.com/grenaud/BCL2BAM2FASTQ.git"
Installation:
-
Build Bamtools first:
cd bamtools/ mkdir build/ cd build/ cmake .. make cd ../..
-
Build the submodules and main code by typing :
make