Use Cargo's dependency patching feature for bio

mpieva · Aug 17, 2023 · d19452e · d19452e
1 parent b2db032
commit d19452e
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Showing 2 changed files with 13 additions and 3 deletions.
diff --git a/Cargo.lock b/Cargo.lock
diff --git a/Cargo.toml b/Cargo.toml
@@ -13,7 +13,7 @@ clap = { version = "4.0", features = ["cargo", "string"] }
 log = "0.4"
 simple_logger = "4.0"
 bincode = "1.3"
-bio = { git = "https://github.com/jch-13/rust-bio.git", branch = "occ_small_k", features = ["runtime-dispatch-simd"] }
+bio = { version = "1.3", features = ["runtime-dispatch-simd"] }
 assert_approx_eq = "1.1"
 smallvec = "1.8"
 rand = "0.8"
@@ -30,6 +30,9 @@ noodles = { version = "0.47", features = ["bam", "bgzf", "core", "cram", "fasta"
 time = { version = "0.3", features = ["local-offset"] }
 flate2 = "1.0"
 
+[patch.crates-io]
+bio = { git = "https://github.com/jch-13/rust-bio.git", branch = "occ_small_k" }
+
 [dev-dependencies]
 criterion = "0.5"
 tempfile = "3.3"