various

Various scripts for different purposes

This repository contains all the bullshit I produce during some routine work.
Never mind.

Hello, world!

Name		Name	Last commit message	Last commit date
Latest commit History 22 Commits
README.md		README.md
RSEM_bt2_paired.sh		RSEM_bt2_paired.sh
RSEM_dirrun.sh		RSEM_dirrun.sh
annotate.sh		annotate.sh
bwt2_build.sh		bwt2_build.sh
cov_filtering.sh		cov_filtering.sh
download_samples.sh		download_samples.sh
gender_of_donors.py		gender_of_donors.py
generate_covbg.sh		generate_covbg.sh
htseq_quant.sh		htseq_quant.sh
join_bg.py		join_bg.py
kallisto_dirrun.sh		kallisto_dirrun.sh
kallisto_paired.sh		kallisto_paired.sh
kallisto_per_gene_counts.py		kallisto_per_gene_counts.py
kallisto_single.sh		kallisto_single.sh
kallisto_tsv_merging.sh		kallisto_tsv_merging.sh
make_picard_metrics.sh		make_picard_metrics.sh
optimal_basis.r		optimal_basis.r
pca_kallisto.r		pca_kallisto.r
rsem_per_gene_counts.py		rsem_per_gene_counts.py
samtools_sort_dir.sh		samtools_sort_dir.sh
star_align.sh		star_align.sh
star_dirrun.sh		star_dirrun.sh
star_mkindex.sh		star_mkindex.sh
transcriptome_extraction.py		transcriptome_extraction.py

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