Merge pull request #36 from mrvollger/smk8 #176

	name: CI

	# Controls when the action will run.
	on:
	# Triggers the workflow on push or pull request events but only for the main branch
	push:
	branches: [main]
	pull_request:
	branches: [main]

	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:
	regular_windows:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Test workflow on regular sized windows
	uses: snakemake/[email protected]
	with:
	directory: .
	snakefile: workflow/Snakefile
	args: "--use-conda -j 3 --conda-cleanup-pkgs cache --conda-frontend mamba -p make_figures cooler cooler_density"
	small_windows:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Test workflow on small windows
	uses: snakemake/[email protected]
	with:
	directory: .
	snakefile: workflow/Snakefile
	args: "--use-conda -j 3 --conda-cleanup-pkgs cache --conda-frontend mamba --config window=400 -p make_figures cooler cooler_density"

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