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mrvollger · May 31, 2023 · a9b1676 · a9b1676
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commit a9b1676
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/workflow/envs/env.yaml b/workflow/envs/env.yaml
@@ -12,7 +12,7 @@ dependencies:
   - bedtools
   - samtools>=1.9
   - pysam
-  - snakemake>=7.8
+  - snakemake>=7.25.0
   - snakefmt
   - bwa
   - pigz 
diff --git a/workflow/scripts/ntn_bam_to_contacts.py b/workflow/scripts/ntn_bam_to_contacts.py
@@ -100,7 +100,7 @@ def main():
                     # print('extra field:', extra_field, file=sys.stderr)
                     alignments += parse_extra_alignments(extra_field)
 
-            for (mapped_seq, mapped_pos) in alignments:
+            for mapped_seq, mapped_pos in alignments:
                 print(
                     "{}\t{}\t{}\t{}\t{}\t{}\t1".format(
                         original_location[0],