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@ms609 ms609 released this 22 Oct 07:09
· 202 commits to master since this release
1.2.0
c62e116
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Learn about vigilant mode.

New features

  • CompareQuartetsMulti() compares quartet status in one tree with status in
    multiple others.
  • VisualizeQuartets() depicts contribution of splits to quartet score.
  • SimilarityToReference() allows comparison against specified reference
    topology.

Changes

  • Deprecate RobinsonFoulds(): renamed to RawSymmetricDifference().
  • QuartetState[s]() now uses sister-of-4 notation, rather than sister-of-1,
    to give values within [0, 3].
  • ManyToManyQuartetAgreement() now returns entries for N and Q.

Improvements

  • Faster C++ implementation of AllQuartets() and QuartetStates().
  • QuartetStatus() now supports non-identical leaf samples.
  • SimilarityMetrics() now handles single tree comparisons.
  • Correctly calculate resolution of unrooted trees with unconventional node
    numbering conventions.
  • Remove errant name when comparing unnamed tree pairs.
  • Small improvements to PlotQuartet().
  • Minor efficiency improvements.
  • Documentation improvements.
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