Control over VisualizeMatching()
#479
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| paths-ignore: | |
| - "Meta**" | |
| - "docs**" | |
| - "**.git" | |
| - "**.json" | |
| - "**.md" | |
| - "**.yml" | |
| - "!**memcheck.yml" | |
| - "**.R[dD]ata" | |
| - "**.Rpro*" | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| paths-ignore: | |
| - "Meta**" | |
| - "docs**" | |
| - "**.git" | |
| - "**.json" | |
| - "**.md" | |
| - "**.yml" | |
| - "!**memcheck.yml" | |
| - "**.R[dD]ata" | |
| - "**.Rpro*" | |
| name: mem-check | |
| jobs: | |
| mem-check: | |
| runs-on: ubuntu-20.04 | |
| # stringi requires libicui18n - apt get libicu-dev too recent, | |
| # libicu66 deprecated in ubuntu 22.04 | |
| # Reinstalling stringi seems not to help | |
| name: valgrind ${{ matrix.config.test }}, ubuntu, R release | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {test: 'tests'} | |
| - {test: 'examples'} | |
| - {test: 'vignettes'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: release | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Install additional dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y texlive-latex-base texlive-fonts-recommended libglpk40 wget valgrind | |
| sudo apt-get install -y valgrind texlive-latex-base | |
| - name: Install system dependencies | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", gsub("#\\d+~(\\d{2}\\.\\d{2}).*", "\\1", Sys.info()[["version"]]))') | |
| - name: Cache R packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_github('RcppCore/Rcpp') | |
| remotes::install_github('ms609/TreeTools') | |
| remotes::install_github('ms609/TreeDistData') | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("devtools") | |
| shell: Rscript {0} | |
| - name: Install TreeDist | |
| run: | | |
| cd .. | |
| R CMD build --no-manual --no-resave-data TreeDist | |
| R CMD INSTALL TreeDist*.tar.gz | |
| cd TreeDist | |
| - name: valgrind - memcheck ${{ matrix.config.test }} | |
| run: | | |
| R -d "valgrind --tool=memcheck --leak-check=full --errors-for-leak-kinds=definite --error-exitcode=1" --vanilla < memcheck/${{ matrix.config.test }}.R |