tidy #491
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# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
on: | |
workflow_dispatch: | |
push: | |
branches: | |
- main | |
- master | |
paths-ignore: | |
- "Meta**" | |
- "docs**" | |
- "**.git" | |
- "**.json" | |
- "**.md" | |
- "**.yml" | |
- "!**memcheck.yml" | |
- "**.R[dD]ata" | |
- "**.Rpro*" | |
pull_request: | |
branches: | |
- main | |
- master | |
paths-ignore: | |
- "Meta**" | |
- "docs**" | |
- "**.git" | |
- "**.json" | |
- "**.md" | |
- "**.yml" | |
- "!**memcheck.yml" | |
- "**.R[dD]ata" | |
- "**.Rpro*" | |
name: mem-check | |
jobs: | |
mem-check: | |
runs-on: ubuntu-20.04 | |
# stringi requires libicui18n - apt get libicu-dev too recent, | |
# libicu66 deprecated in ubuntu 22.04 | |
# Reinstalling stringi seems not to help | |
name: valgrind ${{ matrix.config.test }}, ubuntu, R release | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {test: 'tests'} | |
- {test: 'examples'} | |
- {test: 'vignettes'} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
_R_CHECK_FORCE_SUGGESTS_: false | |
RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: release | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- name: Query dependencies | |
run: | | |
install.packages('remotes') | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
shell: Rscript {0} | |
- name: Install additional dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y texlive-latex-base texlive-fonts-recommended libglpk40 wget valgrind | |
sudo apt-get install -y valgrind texlive-latex-base | |
- name: Install system dependencies | |
run: | | |
while read -r cmd | |
do | |
eval sudo $cmd | |
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", gsub("#\\d+~(\\d{2}\\.\\d{2}).*", "\\1", Sys.info()[["version"]]))') | |
- name: Cache R packages | |
uses: actions/cache@v4 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
- name: Install dependencies | |
run: | | |
remotes::install_github('RcppCore/Rcpp') | |
remotes::install_github('ms609/TreeTools') | |
remotes::install_github('ms609/TreeDistData') | |
remotes::install_deps(dependencies = TRUE) | |
remotes::install_cran("devtools") | |
shell: Rscript {0} | |
- name: Install TreeDist | |
run: | | |
cd .. | |
R CMD build --no-manual --no-resave-data TreeDist | |
R CMD INSTALL TreeDist*.tar.gz | |
cd TreeDist | |
- name: valgrind - memcheck ${{ matrix.config.test }} | |
run: | | |
R -d "valgrind --tool=memcheck --leak-check=full --errors-for-leak-kinds=definite --error-exitcode=1" --vanilla < memcheck/${{ matrix.config.test }}.R |