VisualizeMatching() with unrooted trees
#157
Workflow file for this run
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| name: rev-dep-check | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| paths-ignore: | |
| - "Meta**" | |
| - "docs**" | |
| - "inst**" | |
| - "man**" | |
| - "man-roxygen**" | |
| - "memcheck**" | |
| - "tests**" | |
| - "vignettes**" | |
| - "**.git" | |
| - "**.json" | |
| - "**.md" | |
| - "**.yml" | |
| - "!**revdepcheck.yml" | |
| - "**.R[dD]ata" | |
| - "**.Rpro*" | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| paths-ignore: | |
| - "Meta**" | |
| - "docs**" | |
| - "inst**" | |
| - "man**" | |
| - "man-roxygen**" | |
| - "memcheck**" | |
| - "tests**" | |
| - "vignettes**" | |
| - "**.git" | |
| - "**.json" | |
| - "**.md" | |
| - "**.yml" | |
| - "!**revdepcheck.yml" | |
| - "**.R[dD]ata" | |
| - "**.Rpro*" | |
| # Not using ms609/revdepcheck as pak fails with external dependencies | |
| # https://github.com/r-lib/actions/issues/534 | |
| jobs: | |
| mem-check: | |
| runs-on: ubuntu-latest | |
| name: revdepcheck, R release | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: true # Seemingly not set by --as-cran | |
| _R_CHECK_FORCE_SUGGESTS_: false # CRAN settings | |
| R_COMPILE_AND_INSTALL_PACKAGES: 'never' | |
| _R_CHECK_THINGS_IN_CHECK_DIR_: false | |
| R_REMOTES_STANDALONE: true | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_CRAN_INCOMING_USE_ASPELL_: false # Set to true when can figure how to install aspell on Windows | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: release | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = c('soft', 'Config/Needs/revdeps')), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_github("r-lib/revdepcheck") | |
| remotes::install_deps(dependencies = c('soft', 'Config/Needs/revdeps')) | |
| shell: Rscript {0} | |
| - name: Check reverse dependencies | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: | | |
| revdepcheck::revdep_check(timeout = as.difftime(60, units = 'mins'), num_workers = 4) | |
| problems <- readLines('revdep/problems.md', warn = FALSE) | |
| if (length(problems) > 1) stop(paste0(problems, collapse= "\n")) | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: revdep-results | |
| path: revdep/*.md |