R-CMD-check #594
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# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
on: | |
schedule: | |
- cron: "24 06 * * 1" | |
push: | |
branches: | |
- main | |
- master | |
paths-ignore: | |
- "Meta**" | |
- "memcheck**" | |
- "docs**" | |
- "**.git" | |
- "**.json" | |
- "**.md" | |
- "**.yml" | |
- "!**R-CMD-check.yml" | |
- "**.R[dD]ata" | |
- "**.Rpro*" | |
pull_request: | |
branches: | |
- main | |
- master | |
paths-ignore: | |
- "Meta**" | |
- "memcheck**" | |
- "docs**" | |
- "**.git" | |
- "**.json" | |
- "**.md" | |
- "**.yml" | |
- "!**R-CMD-check.yml" | |
- "**.R[dD]ata" | |
- "**.Rpro*" | |
name: R-CMD-check | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: windows-latest, r: 'release'} | |
- {os: macOS-latest, r: 'release'} | |
- {os: ubuntu-20.04, r: '4.1', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
- {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
env: | |
_R_CHECK_CRAN_INCOMING_: true # Seemingly not set by --as-cran | |
_R_CHECK_FORCE_SUGGESTS_: false # CRAN settings | |
R_COMPILE_AND_INSTALL_PACKAGES: 'never' | |
_R_CHECK_THINGS_IN_CHECK_DIR_: false | |
R_REMOTES_STANDALONE: true | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
RSPM: ${{ matrix.config.rspm }} | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Checkout git repo | |
uses: actions/checkout@v2 | |
# https://github.com/r-lib/actions/issues/534 | |
- name: Remove TreeDistData from DESCRIPTION - pak bug workaround | |
if: runner.os != 'MacOS' | |
run: | | |
sed -i "s/ TreeDistData.*/ glue,/" DESCRIPTION # glue as placeholder | |
- name: Remove TreeDistData from DESCRIPTION (Mac) | |
if: runner.os == 'MacOS' | |
run: | | |
brew install gnu-sed | |
gsed -i "s/ TreeDistData.*/ glue,/" DESCRIPTION # glue as placeholder | |
- name: Set up R | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
- name: Install apt packages (Linux) | |
if: runner.os == 'Linux' | |
run: | | |
sudo apt-get install \ | |
texlive-latex-base texlive-fonts-recommended libcurl4-openssl-dev | |
- name: pak bug workaround - install pak # https://github.com/r-lib/actions/issues/534 | |
run: | | |
install.packages("pak") | |
install.packages("pkgdepends") | |
shell: Rscript {0} | |
- name: pak bug workaround - install TreeDist (CRAN) | |
if: runner.os == 'Windows' | |
run: pak::pkg_install("TreeDist") | |
shell: Rscript {0} | |
- name: pak bug workaround - install TreeDistData | |
run: pak::pkg_install("ms609/TreeDistData") | |
shell: Rscript {0} | |
- name: Set up R dependencies (Windows) | |
if: runner.os == 'Windows' | |
uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: | | |
TreeDistData=?ignore-before-r=99.0.0 | |
needs: | | |
check | |
coverage | |
- name: Set up R dependencies (Non-Windows) | |
if: runner.os != 'Windows' | |
uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: | | |
TreeDistData=?ignore-before-r=99.0.0 | |
phangorn=?ignore-before-r=4.1.0 | |
needs: | | |
check | |
- name: Restore suggests-TreeDistData (Mac) | |
if: runner.os == 'MacOS' | |
run: | | |
gsed -i "s/ glue,/ TreeDistData,/" DESCRIPTION | |
- name: Restore suggests-TreeDistData (non-Mac) | |
if: runner.os != 'MacOS' | |
run: | | |
sed -i "s/ glue,/ TreeDistData,/" DESCRIPTION | |
- name: Set up pandoc | |
uses: r-lib/actions/setup-pandoc@v2 | |
- name: Check package | |
uses: r-lib/actions/check-r-package@v2 | |
- name: Code coverage | |
if: runner.os == 'Windows' | |
run: covr::codecov() | |
shell: Rscript {0} |