Simplify download using /packages

R/tree_distance_info.R

@@ -94,18 +94,25 @@
 #' To balance memory demands and runtime with flexibility, these functions are
 #' implemented for trees with up to 2048 leaves.
 #' To analyse trees with up to 8192 leaves, you will need to a modified version
-#' of \pkg{TreeTools}.
-#' First uninstall \pkg{TreeDist} and \pkg{TreeTools} using `remove.packages()`.
-#' Then use `devtools::install_github("ms609/TreeTools", ref = "more-leaves")`
-#' to install the modified \pkg{TreeTools} package.
-#' Finally, install \pkg{TreeDist} using
-#'`devtools::install_github("ms609/TreeDist")`.
+#' of the package:
+#' `install.packages("BigTreeDist", repos = "https://ms609.github.io/packages/")`
+#' Use `library("BigTreeDist")` *instead* of `library("TreeDist")` to load
+#' the modified package – or prefix functions with the package name, e.g.
+#' `BigTreeDist::TreeDistance()`.
+#' 
+#' As an alternative download method,
+#' uninstall \pkg{TreeDist} and \pkg{TreeTools} using
+#' `remove.packages()`, then use
+#'  `devtools::install_github("ms609/TreeTools", ref = "more-leaves")`
+#' to install the modified \pkg{TreeTools} package; then, 
+#' install \pkg{TreeDist} using
+#' `devtools::install_github("ms609/TreeDist", ref = "more-leaves")`.
 #' (\pkg{TreeDist} will need building from source _after_ the modified 
 #' \pkg{TreeTools} package has been installed, as its code links to values
 #' set in the TreeTools source code.)
 #' 
 #' Trees with over 8192 leaves require further modification of the source code,
-#' which the maintainer will attempt on demand; please [comment on GitHub](
+#' which the maintainer plans to attempt in the future; please [comment on GitHub](
 #' https://github.com/ms609/TreeTools/issues/141) if you would find this useful.
 #' 
 #' @template tree12ListParams