Big*

R/BigTreeDist-package.R

@@ -112,21 +112,21 @@
 #' 
 #' @references
 #' 
-#' - \insertRef{Bocker2013}{TreeDist}
+#' - \insertRef{Bocker2013}{BigTreeDist}
 #' 
-#' - \insertRef{Bogdanowicz2012}{TreeDist}
+#' - \insertRef{Bogdanowicz2012}{BigTreeDist}
 #' 
-#' - \insertRef{Kendall2016}{TreeDist}
+#' - \insertRef{Kendall2016}{BigTreeDist}
 #' 
-#' - \insertRef{Li1996}{TreeDist}
+#' - \insertRef{Li1996}{BigTreeDist}
 #' 
-#' - \insertRef{Lin2012}{TreeDist}
+#' - \insertRef{Lin2012}{BigTreeDist}
 #' 
-#' - \insertRef{Nye2006}{TreeDist}
+#' - \insertRef{Nye2006}{BigTreeDist}
 #' 
-#' - \insertRef{SmithDist}{TreeDist}
+#' - \insertRef{SmithDist}{BigTreeDist}
 #' 
-#' - \insertRef{SmithSpace}{TreeDist}
+#' - \insertRef{SmithSpace}{BigTreeDist}
 #' 
 #' @encoding UTF-8
 #' @keywords internal

R/median.R

@@ -56,7 +56,7 @@
 #' 
 #' @seealso Consensus methods:
 #'   [`ape::consensus()`],
-#'   [`TreeTools::ConsensusWithout()`]
+#'   [`BigTreeTools::ConsensusWithout()`]
 #'   
 #' @importFrom stats median
 #' @family tree space functions

R/plot.R

@@ -277,7 +277,7 @@ VisualizeMatching <- function(Func, tree1, tree2, setPar = TRUE,
 #' @param mapping Two-column matrix giving _x_ and _y_ coordinates of plotted
 #' points.
 #' @param mstEnds Two-column matrix identifying rows of `mapping` at end of
-#' each edge of the MST, as output by [`TreeTools::MSTEdges()`].
+#' each edge of the MST, as output by [`BigTreeTools::MSTEdges()`].
 #' @param distances Matrix or `dist` object giving original distances between
 #' each pair of points.
 #' @param palette Vector of colours with which to colour edges.