'from' is col -> also ext_gene_name

mschubert · Oct 19, 2023 · 26eb6b4 · 26eb6b4
1 parent 588fa72
commit 26eb6b4
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/process/idmap/gene.r b/process/idmap/gene.r
@@ -20,6 +20,8 @@ gene = function(obj, from=NULL, to, dset, summarize=mean) {
 }
 
 gene.character = function(obj, to, from=.guess$id_type(obj), dset=.guess$dset(obj), summarize=mean) {
+    if (from %in% c("hgnc_symbol", "mgi_symbol"))
+        from = "external_gene_name"
     if (to %in% c("hgnc_symbol", "mgi_symbol"))
         to = "external_gene_name"