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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 386 219

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 150 67

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 60 30

Repositories

Showing 10 of 236 repositories
  • igo-demux Public

    Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

    mskcc/igo-demux’s past year of commit activity
    Python 6 Apache-2.0 0 4 1 Updated Apr 26, 2025
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 Apache-2.0 5 97 (2 issues need help) 19 Updated Apr 25, 2025
  • igo-sample-submission-node Public

    Sample Submission API written in node.js

    mskcc/igo-sample-submission-node’s past year of commit activity
    JavaScript 0 1 1 (1 issue needs help) 31 Updated Apr 25, 2025
  • facetsHeatmap Public

    Visualization of copy number profile distributions in a cohort

    mskcc/facetsHeatmap’s past year of commit activity
    R 2 0 0 0 Updated Apr 25, 2025
  • tempo Public

    CCS research pipeline to process WES and WGS TN pairs

    mskcc/tempo’s past year of commit activity
    Groovy 13 7 50 (1 issue needs help) 9 Updated Apr 24, 2025
  • igo-lims-plugins Public

    Sapio LIMS customizations to workflows for IGO

    mskcc/igo-lims-plugins’s past year of commit activity
    Java 2 0 1 7 Updated Apr 23, 2025
  • mskcc/smile-dashboard’s past year of commit activity
    TypeScript 0 AGPL-3.0 8 0 1 Updated Apr 21, 2025
  • smile-server Public
    mskcc/smile-server’s past year of commit activity
    Java 2 4 60 0 Updated Apr 21, 2025
  • voyager-sdk Public
    mskcc/voyager-sdk’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 17, 2025
  • ACCESS-Pipeline Public

    cfDNA Sequencing Pipeline with UMI

    mskcc/ACCESS-Pipeline’s past year of commit activity
    Python 11 MIT 3 38 14 Updated Apr 17, 2025

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