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Release/0.1.1 #626

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Release/0.1.1

Release/0.1.1 #626

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Job Run time
nf-test-changes
5s
prettier
7s
editorconfig
9s
pre-commit
10s
pytest-changes
3s
pytest
0s
nf-core-lint (subworkflows/phylowgs)
51s
nf-core-lint (subworkflows/genome_nexus)
46s
verify-markdown-file (subworkflows/phylowgs)
13s
nf-core-lint (subworkflows/netmhcstabandpan)
43s
verify-markdown-file (subworkflows/genome_nexus)
11s
nf-core-lint (subworkflows/neoantigen_editing)
57s
verify-markdown-file (subworkflows/netmhcstabandpan)
15s
nf-test (subworkflows/phylowgs, docker)
1m 49s
nf-core-lint (subworkflows/traceback)
44s
verify-markdown-file (subworkflows/neoantigen_editing)
11s
nf-core-lint (facets)
43s
nf-test (subworkflows/phylowgs, singularity)
2m 43s
nf-core-lint (snppileup)
41s
verify-markdown-file (subworkflows/traceback)
12s
nf-test (subworkflows/genome_nexus, docker)
1m 35s
nf-core-lint (genotypevariants/all)
49s
verify-markdown-file (facets)
15s
nf-test (subworkflows/genome_nexus, singularity)
2m 18s
nf-core-lint (salmon/index)
46s
verify-markdown-file (snppileup)
13s
nf-test (subworkflows/netmhcstabandpan, docker)
2m 7s
nf-core-lint (salmon/quant)
53s
verify-markdown-file (genotypevariants/all)
14s
nf-test (subworkflows/netmhcstabandpan, singularity)
3m 15s
nf-test (subworkflows/neoantigen_editing, docker)
1m 32s
verify-markdown-file (salmon/index)
16s
nf-core-lint (phylowgs/createinput)
59s
verify-markdown-file (salmon/quant)
16s
nf-test (subworkflows/neoantigen_editing, singularity)
2m 30s
nf-core-lint (phylowgs/multievolve)
43s
verify-markdown-file (phylowgs/createinput)
15s
nf-test (subworkflows/traceback, docker)
2m 3s
nf-core-lint (phylowgs/parsecnvs)
42s
verify-markdown-file (phylowgs/multievolve)
16s
nf-test (subworkflows/traceback, singularity)
3m 2s
nf-core-lint (phylowgs/writeresults)
45s
verify-markdown-file (phylowgs/parsecnvs)
15s
nf-test (facets, docker)
2m 19s
nf-core-lint (gbcms)
48s
verify-markdown-file (phylowgs/writeresults)
13s
nf-test (facets, singularity)
4m 5s
nf-core-lint (neoantigenediting/aligntoiedb)
53s
verify-markdown-file (gbcms)
11s
nf-core-lint (neoantigenediting/computefitness)
48s
nf-test (snppileup, docker)
3m 27s
verify-markdown-file (neoantigenediting/aligntoiedb)
13s
nf-test (snppileup, singularity)
5m 15s
nf-core-lint (neoantigenutils/formatnetmhcpan)
41s
verify-markdown-file (neoantigenediting/computefitness)
13s
nf-core-lint (neoantigenutils/convertannotjson)
51s
nf-core-lint (neoantigenutils/generatemutfasta)
58s
nf-test (genotypevariants/all, docker)
2m 17s
verify-markdown-file (neoantigenutils/formatnetmhcpan)
11s
nf-core-lint (neoantigenutils/generatehlastring)
49s
nf-test (genotypevariants/all, singularity)
3m 51s
verify-markdown-file (neoantigenutils/convertannotjson)
15s
nf-core-lint (neoantigenutils/neoantigeninput)
52s
nf-test (salmon/index, docker)
1m 54s
verify-markdown-file (neoantigenutils/generatemutfasta)
14s
nf-core-lint (polysolver)
48s
nf-test (salmon/index, singularity)
2m 6s
verify-markdown-file (neoantigenutils/generatehlastring)
15s
nf-core-lint (custom/splitfastqbylane)
59s
nf-test (salmon/quant, docker)
1m 39s
verify-markdown-file (neoantigenutils/neoantigeninput)
14s
nf-core-lint (netmhcpan)
56s
nf-test (salmon/quant, singularity)
1m 50s
verify-markdown-file (polysolver)
13s
nf-test (phylowgs/createinput, docker)
2m 9s
nf-core-lint (mutect1)
51s
verify-markdown-file (custom/splitfastqbylane)
15s
nf-test (phylowgs/createinput, singularity)
3m 3s
nf-core-lint (netmhcstabpan)
52s
nf-test (phylowgs/multievolve, docker)
2m 58s
verify-markdown-file (netmhcpan)
12s
nf-core-lint (genomenexus/annotationpipeline)
49s
verify-markdown-file (mutect1)
13s
nf-core-lint (genomenexus/vcf2maf)
48s
nf-test (phylowgs/multievolve, singularity)
3m 49s
verify-markdown-file (netmhcstabpan)
11s
nf-core-lint (rediscoverte)
51s
nf-test (phylowgs/parsecnvs, docker)
2m 15s
verify-markdown-file (genomenexus/annotationpipeline)
15s
nf-core-lint (pvmaf/tagtraceback)
51s
nf-test (phylowgs/parsecnvs, singularity)
3m 8s
verify-markdown-file (genomenexus/vcf2maf)
17s
nf-core-lint (pvmaf/concat)
41s
nf-test (phylowgs/writeresults, docker)
2m 2s
verify-markdown-file (rediscoverte)
12s
nf-test (phylowgs/writeresults, singularity)
3m 13s
nf-core-lint (ppflagfixer)
52s
verify-markdown-file (pvmaf/tagtraceback)
16s
nf-test (gbcms, docker)
1m 20s
verify-markdown-file (pvmaf/concat)
11s
nf-test (gbcms, singularity)
1m 32s
verify-markdown-file (ppflagfixer)
16s
nf-test (neoantigenediting/aligntoiedb, docker)
1m 50s
nf-test (neoantigenediting/aligntoiedb, singularity)
2m 43s
nf-test (neoantigenediting/computefitness, docker)
1m 49s
nf-test (neoantigenediting/computefitness, singularity)
2m 57s
nf-test (neoantigenutils/formatnetmhcpan, docker)
2m 45s
nf-test (neoantigenutils/formatnetmhcpan, singularity)
4m 0s
nf-test (neoantigenutils/convertannotjson, docker)
1m 25s
nf-test (neoantigenutils/convertannotjson, singularity)
2m 0s
nf-test (neoantigenutils/convertannotjson, conda)
1m 17s
nf-test (neoantigenutils/generatemutfasta, docker)
2m 32s
nf-test (neoantigenutils/generatemutfasta, singularity)
3m 40s
nf-test (neoantigenutils/generatehlastring, docker)
2m 18s
nf-test (neoantigenutils/generatehlastring, singularity)
3m 35s
nf-test (neoantigenutils/neoantigeninput, docker)
1m 30s
nf-test (neoantigenutils/neoantigeninput, singularity)
1m 53s
nf-test (polysolver, docker)
8m 15s
nf-test (polysolver, singularity)
10m 7s
nf-test (custom/splitfastqbylane, docker)
1m 14s
nf-test (custom/splitfastqbylane, singularity)
1m 32s
nf-test (custom/splitfastqbylane, conda)
1m 21s
nf-test (netmhcpan, docker)
6m 14s
nf-test (netmhcpan, singularity)
7m 30s
nf-test (mutect1, docker)
1m 26s
nf-test (mutect1, singularity)
1m 40s
nf-test (netmhcstabpan, docker)
8m 57s
nf-test (netmhcstabpan, singularity)
10m 40s
nf-test (genomenexus/annotationpipeline, docker)
1m 50s
nf-test (genomenexus/annotationpipeline, singularity)
2m 29s
nf-test (genomenexus/vcf2maf, docker)
2m 4s
nf-test (genomenexus/vcf2maf, singularity)
2m 46s
nf-test (rediscoverte, docker)
1m 38s
nf-test (rediscoverte, singularity)
3m 16s
nf-test (pvmaf/tagtraceback, docker)
2m 26s
nf-test (pvmaf/tagtraceback, singularity)
4m 28s
nf-test (pvmaf/concat, docker)
1m 59s
nf-test (pvmaf/concat, singularity)
3m 24s
nf-test (ppflagfixer, docker)
2m 10s
nf-test (ppflagfixer, singularity)
3m 55s
confirm-pass
1s
3h 59m 48s