Feature/neosv #627
johnooohtest.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
Matrix: verify-markdown-file
confirm-pass
0s
Annotations
11 errors and 29 warnings
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editorconfig
Process completed with exit code 1.
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prettier
Process completed with exit code 1.
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nf-test (subworkflows/netmhcstabandpan, docker)
Process completed with exit code 1.
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nf-test (neoantigenutils/formatnetmhcpan, docker)
Process completed with exit code 1.
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nf-test (subworkflows/netmhcstabandpan, singularity)
Process completed with exit code 1.
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nf-test (neoantigenutils/formatnetmhcpan, singularity)
Process completed with exit code 1.
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nf-test (netmhcpan, docker)
Process completed with exit code 1.
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nf-test (netmhcstabpan, docker)
Process completed with exit code 1.
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nf-test (netmhcpan, singularity)
Process completed with exit code 1.
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nf-test (netmhcstabpan, singularity)
Process completed with exit code 1.
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confirm-pass
Process completed with exit code 1.
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nf-test-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pre-commit
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (neoantigenutils/formatnetmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (neoantigenutils/neoantigeninput)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (neosv)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (netmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (neoantigenutils/formatnetmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (netmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (netmhcstabpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (neosv)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (subworkflows/netmhcstabandpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-core-lint (neoantigenutils/neoantigeninput)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, actions/setup-java@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (netmhcstabpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (subworkflows/netmhcstabandpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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verify-markdown-file (subworkflows/netmhcstabandpan)
👉 Get File Contents: Not Found - https://docs.github.com/rest/repos/contents#get-repository-content
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nf-test (neoantigenutils/neoantigeninput, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (neoantigenutils/neoantigeninput, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (subworkflows/netmhcstabandpan, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (neoantigenutils/formatnetmhcpan, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (subworkflows/netmhcstabandpan, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (neosv, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (neosv, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (neoantigenutils/formatnetmhcpan, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (netmhcpan, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (netmhcstabpan, docker)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (netmhcpan, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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nf-test (netmhcstabpan, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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