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Merge pull request #130 from mskcc-omics-workflows/release/0.1.1 #261

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Merge pull request #130 from mskcc-omics-workflows/release/0.1.1

Merge pull request #130 from mskcc-omics-workflows/release/0.1.1 #261

Re-run triggered August 28, 2024 20:29
@huyu335huyu335
6513ff7
main
Status Success
Total duration 53s
Artifacts –

gitbook-sync.yml

on: push
pytest-changes
4s
pytest-changes
nf-test-changes
7s
nf-test-changes
Matrix: new feature
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144 warnings
nf-test-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (subworkflows/netmhcstabandpan)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (subworkflows/netmhcstabandpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (subworkflows/netmhcstabandpan)
new feature (subworkflows/netmhcstabandpan)
👉 undefined
new feature (subworkflows/netmhcstabandpan)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (subworkflows/netmhcstabandpan)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (subworkflows/traceback)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (subworkflows/traceback)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (subworkflows/traceback)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (subworkflows/traceback)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (subworkflows/traceback)
new feature (subworkflows/traceback)
👉 undefined
new feature (subworkflows/genome_nexus)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (subworkflows/genome_nexus)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (subworkflows/genome_nexus)
new feature (subworkflows/genome_nexus)
👉 undefined
new feature (subworkflows/genome_nexus)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (subworkflows/genome_nexus)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (subworkflows/neoantigen_editing)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (subworkflows/neoantigen_editing)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (subworkflows/neoantigen_editing)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (subworkflows/neoantigen_editing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (subworkflows/neoantigen_editing)
new feature (subworkflows/neoantigen_editing)
👉 undefined
new feature (salmon/index)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (snppileup)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (salmon/index)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (snppileup)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (salmon/index)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (snppileup)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (salmon/index)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (snppileup)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (facets)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (facets)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (facets)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (facets)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (genotypevariants/all)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (genotypevariants/all)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (genotypevariants/all)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (genotypevariants/all)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (phylowgs/createinput)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (phylowgs/createinput)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (phylowgs/createinput)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (phylowgs/createinput)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (phylowgs/multievolve)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (phylowgs/multievolve)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (phylowgs/multievolve)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (phylowgs/multievolve)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (phylowgs/parsecnvs)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (phylowgs/parsecnvs)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (phylowgs/parsecnvs)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (phylowgs/parsecnvs)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (salmon/quant)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (salmon/quant)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (salmon/quant)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (salmon/quant)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (phylowgs/writeresults)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (phylowgs/writeresults)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (phylowgs/writeresults)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (phylowgs/writeresults)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (gbcms)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (gbcms)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (gbcms)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (gbcms)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (neoantigenediting/aligntoiedb)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (neoantigenediting/aligntoiedb)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (neoantigenediting/aligntoiedb)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (neoantigenediting/aligntoiedb)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (neoantigenutils/convertannotjson)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (neoantigenutils/convertannotjson)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (neoantigenutils/convertannotjson)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (neoantigenutils/convertannotjson)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (neoantigenediting/computefitness)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (neoantigenediting/computefitness)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (neoantigenediting/computefitness)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (neoantigenediting/computefitness)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (neoantigenutils/formatnetmhcpan)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (neoantigenutils/formatnetmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (neoantigenutils/formatnetmhcpan)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (neoantigenutils/formatnetmhcpan)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (neoantigenutils/generatemutfasta)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (neoantigenutils/generatemutfasta)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (custom/splitfastqbylane)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (neoantigenutils/neoantigeninput)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (neoantigenutils/generatemutfasta)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (custom/splitfastqbylane)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (neoantigenutils/neoantigeninput)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (neoantigenutils/generatemutfasta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (custom/splitfastqbylane)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (neoantigenutils/neoantigeninput)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (custom/splitfastqbylane)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (neoantigenutils/neoantigeninput)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (polysolver)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (polysolver)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (polysolver)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (polysolver)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (netmhcpan)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (netmhcpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (netmhcpan)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (netmhcpan)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (mutect1)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (neoantigenutils/generatehlastring)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (mutect1)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (neoantigenutils/generatehlastring)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (mutect1)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (neoantigenutils/generatehlastring)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (mutect1)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (neoantigenutils/generatehlastring)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (netmhcstabpan)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (netmhcstabpan)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (netmhcstabpan)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (netmhcstabpan)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (genomenexus/annotationpipeline)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (genomenexus/annotationpipeline)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (genomenexus/annotationpipeline)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (genomenexus/annotationpipeline)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (rediscoverte)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (rediscoverte)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (rediscoverte)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (rediscoverte)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (genomenexus/vcf2maf)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (genomenexus/vcf2maf)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (genomenexus/vcf2maf)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (genomenexus/vcf2maf)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (pvmaf/tagtraceback)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (pvmaf/tagtraceback)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (pvmaf/tagtraceback)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (pvmaf/tagtraceback)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (pvmaf/concat)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (pvmaf/concat)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (pvmaf/concat)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (ppflagfixer)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (pvmaf/concat)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (ppflagfixer)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (ppflagfixer)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (ppflagfixer)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (subworkflows/phylowgs)
The following actions uses node12 which is deprecated and will be forced to run on node16: andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
new feature (subworkflows/phylowgs)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, andstor/file-existence-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
new feature (subworkflows/phylowgs)
Unexpected input(s) 'branch', valid inputs are ['files', 'ignore_case', 'follow_symbolic_links', 'allow_failure']
new feature (subworkflows/phylowgs)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
new feature (subworkflows/phylowgs)
new feature (subworkflows/phylowgs)
👉 undefined